Skip to content

Fix CI failures #4147

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 5 commits into from
Jul 28, 2020
Merged

Fix CI failures #4147

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
255c1f2
Remove adding libgit2 PPA
yutannihilation Jul 25, 2020
ad0c904
Skip geom_quantile() tests if quantreg is not available
yutannihilation Jul 25, 2020
9853ec0
Do not install gdal
yutannihilation Jul 25, 2020
c876817
Tweak
yutannihilation Jul 25, 2020
cc820d2
Install only binary packages and use Linux for R-devel
yutannihilation Jul 28, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
19 changes: 3 additions & 16 deletions .github/workflows/R-CMD-check.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ jobs:
config:
- {os: windows-latest, r: '4.0', vdiffr: true, xref: true}
- {os: macOS-latest, r: '4.0', vdiffr: true, xref: true}
- {os: macOS-latest, r: 'devel', vdiffr: false, xref: true}
- {os: ubuntu-16.04, r: 'devel', vdiffr: false, xref: true, cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '4.0', vdiffr: true, xref: true, cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.6', vdiffr: false, xref: true, cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.5', vdiffr: false, xref: true, cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
Expand Down Expand Up @@ -71,10 +71,6 @@ jobs:
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
# Use cran:libgit2 PPA to avoid conflicts of libcurl4-gnutls-dev
# Remove this after https://github.com/r-lib/actions/pull/97 gets merged
sudo add-apt-repository ppa:cran/libgit2

Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
Expand All @@ -85,17 +81,8 @@ jobs:
# XQuartz is needed by vdiffr
brew cask install xquartz

# To install vdiffr, these three libraries/tools are needed in addition to XQuartz
# - freetype (already installed, needed by systemfonts)
# - cairo (not installed, needed by gdtools)
# - pkg-config (not installed, needed to set proper build settings)
brew install pkg-config cairo

# Since sf dependencies are a bit heavy, install them only when they are needed
SF_NEEDS_UPDATED=$(Rscript -e 'if (!"sf" %in% installed.packages()[,"Package"] || "sf" %in% old.packages()[,"Package"]) cat("yes")')
if [ "${SF_NEEDS_UPDATED}" == "yes" ]; then
brew install udunits gdal
fi
# Use only binary packages
echo 'options(pkgType = "binary")' >> ~/.Rprofile

- name: Install dependencies
run: |
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/pkgdown.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ jobs:
- name: Install dependencies
run: |
install.packages("remotes")
remotes::install_deps(dependencies = TRUE)
remotes::install_deps(dependencies = TRUE, type = "binary")
remotes::install_github("tidyverse/tidytemplate")
remotes::install_dev("pkgdown")
shell: Rscript {0}
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/pr-commands.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ jobs:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-r@master
- name: Install dependencies
run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'
run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE, type = "binary"'
- name: Document
run: Rscript -e 'roxygen2::roxygenise()'
- name: commit
Expand Down
15 changes: 1 addition & 14 deletions .github/workflows/test-coverage.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -39,27 +39,14 @@ jobs:
restore-keys: ${{ env.cache-version }}-macOS-r-${{ env.r-version }}-

- name: Install system dependencies on macOS
if: runner.os == 'macOS'
run: |
# XQuartz is needed by vdiffr
brew cask install xquartz

# To install vdiffr, these three libraries/tools are needed in addition to XQuartz
# - freetype (already installed, needed by systemfonts)
# - cairo (not installed, needed by gdtools)
# - pkg-config (not installed, needed to set proper build settings)
brew install pkg-config cairo

# Since sf dependencies are a bit heavy, install them only when they are needed
SF_NEEDS_UPDATED=$(Rscript -e 'if (!"sf" %in% installed.packages()[,"Package"] || "sf" %in% old.packages()[,"Package"]) cat("yes")')
if [ "${SF_NEEDS_UPDATED}" == "yes" ]; then
brew install udunits gdal
fi

- name: Install dependencies
run: |
install.packages(c("remotes"))
remotes::install_deps(dependencies = TRUE)
remotes::install_deps(dependencies = TRUE, type = "binary")
remotes::install_cran("covr")
shell: Rscript {0}

Expand Down
2 changes: 2 additions & 0 deletions tests/testthat/test-geom-quantile.R
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
context("geom-quantile")

test_that("geom_quantile matches quantile regression", {
skip_if_not_installed("quantreg")

set.seed(6531)
x <- rnorm(10)
df <- tibble::tibble(
Expand Down