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32 Open 93 Closed
32 Open 93 Closed
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Issues list

Apply VCF to reference
#154 opened Oct 3, 2024 by Mossy-Frog
1
call somatic SVs
#153 opened Sep 30, 2024 by DayTimeMouse
1
[Help needed] Translocation detection excluding telomere and repeated sequence
#152 opened Sep 23, 2024 by ThDef
1
For multiple samples, why should cuteSV be run twice? question Further information is requested
#150 opened Aug 13, 2024 by jahemker
1
cuteSV with ONT amplicon data
#148 opened Jul 18, 2024 by ctarpey
1
Missing quality scores QUAL
#144 opened Apr 9, 2024 by schmart95
1
Call SV in multiple sample
#143 opened Mar 26, 2024 by lg10is1
1
Q: Detection SV by aligning to diploid (not haplotype resolved) genome question Further information is requested
#142 opened Mar 21, 2024 by Alteroldis
2
cuteSV fails to output the result due to computational resources bug Something isn't working
#139 opened Feb 23, 2024 by bojan-balic-sbg
1
cython is required at build time but not install time
#136 opened Dec 11, 2023 by tillea
2
Installation fails
#135 opened Dec 8, 2023 by pkerbs
5
Question about vcf INFO filed
#134 opened Nov 27, 2023 by hyunjokoo
1
Some bases in the “REF” column are incorrect, and this occurs in INS (insertion) types.
#133 opened Nov 16, 2023 by wk1352313
1
repeat at the SV breakpoint help wanted Extra attention is needed
#127 opened Jul 3, 2023 by charliechen912ilovbash
4
Malformed VCF due to R reference base
#124 opened Jun 11, 2023 by dennishendriksen
3
Force calling
#122 opened May 27, 2023 by lunky-zao
2
KeyError: 'GL000008.2'
#121 opened May 23, 2023 by aojielian
3
No SV detection unlike other tools
#120 opened May 12, 2023 by luneangevin
1
F1 % value, Precision % value, and Recall % value
#119 opened May 12, 2023 by ghost
1
Achieve the INV fragments help wanted Extra attention is needed
#114 opened Mar 25, 2023 by AndyLy2Zy
13
Run the aligned files from different smrtcells help wanted Extra attention is needed
#112 opened Mar 22, 2023 by priyambial123
3
Variants smaller than threshold set
#111 opened Mar 20, 2023 by Akazhiel
1
bed file feature enhancement New feature or request
#105 opened Nov 9, 2022 by QuentinBoone
5
BND representation help wanted Extra attention is needed
#102 opened Sep 18, 2022 by vmukhina
1
Segmentation fault in population calling
#101 opened Sep 15, 2022 by kendaida
2
ProTip! Exclude everything labeled bug with -label:bug.