Added:

• exposed "min bead number" parameter for automated bead detection in the gui, as well as manual intensity threshold.
• alert when automated bead detection gives suspicious results (dramatically different number of beads in each channel).
• ability to undo "Rename Scriped" (rename_iters function), under Process Menu

Changed:

• more robust settings.txt file parsing (thanks for sample Carlos!)
• refactored the rename_iters function to be more robust
• slightly stricter OTF file naming regex. updated docs accordingly

Fixed:

• fixed "invalid literal for int() with base 10" bug in refRegWave validation
• (hopefully) fixed bug that bugs you to update llspy_extra when you've already done it. If this still fails, consider reinstalling (deleting your 'llsenv' anaconda environment and starting again with a fresh one).