Tweaks for building against the newer google base image.

* Python tries to protect you, but that's less useful in a docker image. * Incorporate workaround suggestion from yaml/pyyaml#724.
tmooney · Dec 5, 2024 · df48e24 · df48e24
1 parent d47e34c
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diff --git a/Dockerfile b/Dockerfile
@@ -31,4 +31,4 @@ ADD manual-workflows/server_startup.py /opt/manual-workflows/server_startup.py
 ADD manual-workflows/start.sh /opt/manual-workflows/start.sh
 ADD manual-workflows/cromwell.service /opt/manual-workflows/cromwell.service
 
-RUN pip3 install -r /opt/scripts/requirements.txt
+RUN pip3 install --no-build-isolation --break-system-packages -r /opt/scripts/requirements.txt
diff --git a/scripts/requirements.txt b/scripts/requirements.txt
@@ -1,3 +1,5 @@
+cython<3.0.0
+
 cwl_utils
 miniwdl == 1.2.1