-
Notifications
You must be signed in to change notification settings - Fork 55
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Correct parameter for the subnet size in adaptive search #140
Conversation
I've requested @JuliaKukulies and I as reviewers for this. I should be able to get to this next week. Once this is reviewed, it may make sense to release it as part of a 1.3.2 bugfix release. I'm hesitant to try to get it into 1.3.1, but I could see this and #124 for example making it into a 1.3.2 release. For now, I've kept it on the 1.5 milestone, but may move it to a new 1.3.2 milestone. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Thanks @snilsn, very good and careful observation! No objection from my side for the code changes you made. The only thing I wonder is whether we can add a more clear description for the subnetwork_size
parameter in the docstrings (I mean to make clear that it means different things dependent on whether you specify adaptive_step
/adaptive_stop
or not). As I understand it, you would want it to be rather small when you do adaptive search and rather large when you do not. So this is important information the user needs to know.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I'm happy with these changes. Good catch on finding the bug.
With the approving reviews, @snilsn please confirm that you're ready to merge and we will get this in |
Yes, from my side everything is ready for merging.
I will adress this in an update of PR #138 |
Good, yes agreed that the documentation update is better for #138 ! Thanks! |
This pull request aims at solving issue #133.
If neither adaptive_step nor adaptive_stop are given, MAX_SUB_NET_SIZE is set, otherwise MAX_SUB_NET_SIZE_ADAPTIVE is changed in the linking_trackpy()-function.