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Add option to define different n_min_threshold dependent on thresholds #208

Merged
merged 13 commits into from
Jan 24, 2023
Merged

Add option to define different n_min_threshold dependent on thresholds #208

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b3d3053
added option to input n_min_threshold as dict or list
Dec 1, 2022
422df80
added test for n_min_threshold as list or dict
Dec 1, 2022
c76395d
black formatting
Dec 1, 2022
54efca9
fixed typo and extended test
Dec 1, 2022
73b0276
added example to existing notebook
Dec 1, 2022
2a5b9a9
black formatting
Dec 1, 2022
c799ccf
highlighting text in notebook
Dec 1, 2022
fb3fd75
fixed indentation issue
Dec 1, 2022
dfdb31d
fixed error that is raised when multiple values for n_min_threshold a…
Dec 1, 2022
0275d8f
fixed small things in feature_detection.py according to nils suggestions
Dec 8, 2022
6d2fad6
add space in tobac/tests/test_feature_detection.py
JuliaKukulies Dec 8, 2022
6f10f67
black formatting
Dec 8, 2022
1040225
Merge branch 'allow_threshold_dependent_min_areas' of github.com:Juli…
Dec 8, 2022
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45 changes: 33 additions & 12 deletions doc/conf.py
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Original file line number Diff line number Diff line change
@@ -1,39 +1,60 @@
'''This file is used to configure the Sphinx build of our documentation.
"""This file is used to configure the Sphinx build of our documentation.
The documentation on setting this up is here: https://www.sphinx-doc.org/en/master/usage/configuration.html
'''
"""

# This is the standard readthedocs theme.
import sphinx_rtd_theme
import sys, os

sys.path.insert(0, os.path.abspath('extensions'))
sys.path.insert(0, os.path.abspath("extensions"))

# What Sphinx extensions do we need
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.todo',
'sphinx.ext.coverage', 'sphinx.ext.imgmath', 'sphinx.ext.ifconfig',
'sphinx_rtd_theme','sphinx.ext.napoleon', 'nbsphinx']
extensions = [
"sphinx.ext.autodoc",
"sphinx.ext.doctest",
"sphinx.ext.todo",
"sphinx.ext.coverage",
"sphinx.ext.imgmath",
"sphinx.ext.ifconfig",
"sphinx_rtd_theme",
"sphinx.ext.napoleon",
"nbsphinx",
]


html_theme = "sphinx_rtd_theme"

html_static_path = ['_static']
html_static_path = ["_static"]


project = u'tobac'
project = "tobac"

master_doc = 'index'
master_doc = "index"

# allow dropdowns
collapse_navigation = False

# Include our custom CSS (currently for special table config)
def setup(app):
app.add_css_file("theme_overrides.css")
app.add_css_file("theme_overrides.css")


# This should include all modules used in tobac. These are dummy imports,
# but should include both required and optional dependencies.
autodoc_mock_imports = ['numpy', 'scipy', 'scikit-image', 'pandas', 'pytables', 'matplotlib', 'iris',
'cf-units', 'xarray', 'cartopy', 'trackpy', 'numba']
autodoc_mock_imports = [
"numpy",
"scipy",
"scikit-image",
"pandas",
"pytables",
"matplotlib",
"iris",
"cf-units",
"xarray",
"cartopy",
"trackpy",
"numba",
]

sys.path.insert(0, os.path.abspath("../"))

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