Only rechunk in non-core dims in test_count_call_alleles__chunked #27
Workflow file for this run
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name: Check docs | |
on: | |
push: | |
pull_request: | |
schedule: | |
# Run at the end of every day | |
- cron: "0 0 * * *" | |
jobs: | |
build: | |
# Scheduled runs only on the origin org | |
if: (github.event_name == 'schedule' && github.repository_owner == 'sgkit-dev') || (github.event_name != 'schedule') | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.9"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
sudo apt update -y | |
sudo apt install graphviz # Needed for documentation | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt -r requirements-dev.txt -r requirements-doc.txt | |
- name: Run pre-commit | |
uses: pre-commit/action@v2.0.0 | |
- name: Check for Sphinx doc warnings | |
run: | | |
cd docs | |
make html SPHINXOPTS="-W --keep-going -n" | |
- uses: actions/upload-artifact@v2 | |
if: failure() | |
with: | |
name: gwas_tutorial | |
path: /home/runner/work/sgkit/sgkit/docs/_build/html/reports/examples/gwas_tutorial.err.log | |
- uses: actions/upload-artifact@v2 | |
if: failure() | |
with: | |
name: relatedness_tutorial | |
path: /home/runner/work/sgkit/sgkit/docs/_build/html/reports/examples/relatedness_tutorial.err.log |