Mathematical Modeling of Infectious Disease Dynamics

Code, data and prose of the book: Spatial Microsimulation with R

nlrx NetLogo R

villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management.

R Package for individual based epidemiological models

Network Models of HIV Transmission Dynamics among MSM and Heterosexuals

🐟 R package for NetLogo experiments http://bergant.github.io/nlexperiment/

A general framework for quick epidemiological ABM models

Agent based modelling of banking sector and exogenous shocks.

Agent-based model investigating how social interactions can result in self-organized behavioral specialization and social network structure.

R Shiny package to analyze output from NetLogo behaviorspace experiments

UseR2019 - Hyesop Shin: Bridging R and NetLogo

Agent-based stochastic model for the transmission dynamics of Schistosoma mansoni in humans. The model incorporates specification of multiple assumptions for the mechanisms regulating transmission. An ODE-module is integrated into the agent-based framework to simulate explicit infection dynamics in the snail intermediate host.

This repository contains the code and presentation of the workshop on parallel computing & cluster computing using R in collaboration with SURF.

Agent-based model for self-organized division of labor in simulated societies.

Empirical Agent Training Software for Machine Learning Simulation Modeling

R code to animate the Shelling model of segregation

An agent-based model to test the effect of different social-psychological aspects on the spread of epidemics

Workshop Website

Simple agent-based models on a grid graph (basic 2D cellular automata)