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bustools

Here are 4 public repositories matching this topic...

nf-core / scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

workflow rna-seq pipeline nextflow single-cell kallisto 10x-genomics 10xgenomics nf-core bustools alevin cellranger star-solo

Updated Nov 22, 2024
Nextflow

pachterlab / kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

scrna-seq kallisto single-cell-rna-seq rna-velocity-estimation bustools kb-python

Updated Oct 21, 2024
Python

basilkhuder / Seurat-to-RNA-Velocity

A guide to using a Seurat object in conjunction with RNA Velocity

kallisto seurat bustools anndata rna-velocity kb-python integrating-loom velocyto scvelo kallisto-bustools

Updated Dec 25, 2021

kallistobustools

pachterlab / kallistobustools

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

rna-seq single-cell kallisto bustools

Updated Jun 19, 2022

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