eDNA metabarcoding pipeline

An open-source data management system for tracking environmental DNA samples and metadata

Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.

Comparison between eDNA and trawling for fish biodiversity metrics

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

Calculate optimal combination of eDNA barcodes based on amplicon sequences

A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.

Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)

desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics