Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

Toolbox for including enzyme constraints on a genome-scale model.

Enzyme-constrained genome-scale models in python

A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism

PRESTO: Correction of turnover numbers in enzyme-constraint metabolic models

Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.

KMG060 Systems Biology course - repo for students

Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models

GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".

Collection of scripts for reproduction of simulation results in "Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0".

Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.