Python library to handle Gene Ontology (GO) terms

Gene set variation analysis

Differential expression analysis for single-cell RNA-seq data.

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

Gene Set Clustering based on Functional annotation

Julia implementation of the next generation GSEA 🏔️

A Tidy Framework to Hack Gene Expression Signatures

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

piano - An R/Bioconductor package for gene set analysis

Flexible gene set enrichment analysis

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Package to gather gene information, annotations, and functions

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Integration of pathway-related information from MSigDB in BEL

Assessing dIfferential expression, dispersion, distribution analyses on TCGA tumour-normal RNA-seq datasets

Experimental version of data package associated with chipenrich

Testing, development environment for a new project of KN BIBS

AskoR pipeline: analysis of gene expression data, using edgeR.