💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

KEGG Module Evaluation Tool

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.

The metabolic twin model of yeast

Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models.

This repository contains all changes made to the strain specific models of Corynebacterium striatum.

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024

Python command-line software for whole-proteomes annotation based on structural homology.

Modeling phycospheric metabolic interactions in python

Investigating metabolic re-wiring in the children cohort using the Genome-Scale Metabolic (GEM) models by incorporating transcriptomics data.

Computational modeling of a human astrocyte with multi-omic data

Connectivity between molecular components and metabolic subsystems in humanGEM