Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Time-series analysis using the Matrix profile in Julia

Python package to plot sequence logos

Motif manipulation functions for R.

Nanomotif - a tool for identifying methylated motifs in metagenomic samples

surrogate quantitative interpretability for deepnets

Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

Bioinformatic approach to identify functional transcription factor binding motifs

This application searches inside a text sequence for words that resemble those inside a list of similar words.

Python bindings for the TFM-Pvalue program.

A proof-of-concept library for motif analysis using MDL techniques.

Time Series with Matrix Profile in Java

Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Sequence Logos based on maximum values is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

Scripts for motif assessment for HOCOMOCO v10/v11.

This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7

squid repository for manuscript analysis

An integrative toolkit for detecting cell type-specific regulators