Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

A Python package for gene network analysis

A Python toolkit for setting up benchmarking dataset using biomedical networks

NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity

A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks

A Python package for network analysis through diffusion label propagation algorithms

A Python package for analyzing harmonized biological networks through diffusion algorithms

Simulating and analyzing dynamical network models

Code for my Master project

Semantic Capture of Relationships In Biological Literature (scribl)

centrality measures in ecological networks