Code and files for the main nf-core website.

On-demand containers provisioning service

Hands-on Nextflow training materials and information

A python library with scripts and helpers classes for quantms workflow

Repository to host tool-specific module files for the Nextflow DSL2 community!

RNAcentral data import pipeline

A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA

scATAC-seq pipeline based on nextflow

A GitHub action to install Nextflow

Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.

The Nextflow language server

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

An app store for scientific workflows, tools, notebooks, and services

A DSL for data-driven computational pipelines

Nextflow training material

A collection of modules and sub-workflows for Nextflow

A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.

Amplicon sequencing analysis workflow using DADA2 and QIIME2

k-mer similarity analysis pipeline

Tree Species Classification Run Within a kubernetes Cluster