PGPg_finder v1.1.0

New Features in This Release

We’ve introduced several enhancements to the DIAMOND integration, providing greater flexibility and control over the sequence alignment process. The new features include:

Filter Options:

--piden: Set the minimum identity for DIAMOND alignments (default: 30%).
--qcov: Define the minimum query coverage percentage for alignments (default: 50%).
--bitscore Minimum bit score to report alignments."
--evalue Maximum e-value to report alignments (default: 1e-5)."

Extended Parameter Support:

--extra: Add custom DIAMOND arguments to fine-tune your analysis (optional).
--dmode: Specify the DIAMOND sensitivity mode for sequence search, supporting the following options:
--fast
--mid-sensitive
--sensitive
--more-sensitive
--very-sensitive
--ultra-sensitive

###These enhancements provide greater customization for advanced users, enabling tailored analyses to meet diverse research needs.