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Fix MATLAB functions - let them import ROIs from TrackMate >= v7 #293

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merged 7 commits into from
May 13, 2024

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@tinevez tinevez commented May 13, 2024

The new trackmateSpots.m and trackmateGraph.m MATLAB functions do no support the TrackMate files created with v >=7 and can return the 2D polygon that describe the spot contours.

Fix #257

Their documentation has been updated.

There are also 2 example scripts, that generate first this:
Screenshot 2024-05-13 at 16 50 24

and the second one makes a movie in MATLAB like this:

MAX_Merged.mp4

@tinevez tinevez merged commit ab5107c into master May 13, 2024
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@tinevez tinevez deleted the fix-matlab-functions branch May 13, 2024 15:00
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This pull request has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/trackmate-advanced-cellpose-detector/95462/19

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This pull request has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/error-importing-trackmate-ilastik-xml-results-into-matlab/80444/10

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Matlab graph import script fails on results with segmentation
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