kokkos: view_copy fix #2863

ndellingwood · 2018-06-01T03:59:46Z

view_copy fix in Kokkos deep_copy and unit tests added.
Debugging and fix with @crtrott and @dsunder.

Issue exposed by failing Panzer examples reported in #2827.

This PR is a patch created from kokkos/kokkos#1653.

Changes to be committed:
modified: ../src/Kokkos_CopyViews.hpp
modified: CMakeLists.txt
modified: Makefile
new file: TestViewCopy.hpp
new file: cuda/TestCudaHostPinned_ViewCopy.cpp
new file: cuda/TestCudaUVM_ViewCopy.cpp
new file: rocm/TestROCmHostPinned_ViewCopy.cpp

@crtrott

view_copy fix in Kokkos deep_copy and unit tests added. Debugging and fix with @crtrott and @dsunder. Issue exposed by failing Panzer examples reported in #2827. This PR is a patch created from kokkos/kokkos#1653. Changes to be committed: modified: ../src/Kokkos_CopyViews.hpp modified: CMakeLists.txt modified: Makefile new file: TestViewCopy.hpp new file: cuda/TestCudaHostPinned_ViewCopy.cpp new file: cuda/TestCudaUVM_ViewCopy.cpp new file: rocm/TestROCmHostPinned_ViewCopy.cpp

ndellingwood · 2018-06-01T04:00:30Z

PR created from a patch of PR kokkos/kokkos#1653.
Kokkos spot-check passed on apollo.

trilinos-autotester · 2018-06-01T04:05:44Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2018-06-01T04:07:26Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 759
Status: STARTED

Jenkins Parameters

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MPI_MODULE	sems-openmpi/1.8.7
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TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
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TRILINOS_SOURCE_SHA	`7983166`
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Test Name: Trilinos_pullrequest_gcc_4.8.4

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Test Name: Trilinos_pullrequest_intel_17.0.1

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TEST_REPO_ALIAS	TRILINOS
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TRILINOS_TARGET_SHA	`a69fdc3`

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

ndellingwood · 2018-06-01T04:21:58Z

atdm cuda-dbg build going now, will post results once it finishes.

ndellingwood · 2018-06-01T06:15:31Z

Panzer Example test results - spot check from failures reported in #2827
Ran using the same node allocation setup and ctest -j16 to match the reproducer instructions.

CurlLaplacianExample:

bash-4.2$ ctest -j16
Test project /ascldap/users/ndellin/trilinos/Trilinos/Build/ATDM-cudadbg/packages/panzer/adapters-stk/example/CurlLaplacianExample
    Start 1: PanzerAdaptersSTK_CurlLaplacianExample
    Start 2: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-1
    Start 3: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-2
    Start 4: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-3
1/5 Test #1: PanzerAdaptersSTK_CurlLaplacianExample .........................   Passed   14.31 sec
    Start 5: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-4
2/5 Test #2: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-1 ...   Passed   28.15 sec
3/5 Test #3: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-2 ...   Passed   37.79 sec
4/5 Test #4: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-3 ...   Passed   63.33 sec
5/5 Test #5: PanzerAdaptersSTK_CurlLaplacianExample-ConvTest-Quad-Order-4 ...   Passed  155.61 sec

100% tests passed, 0 tests failed out of 5

MixedPoissonExample:

bash-4.2$ ctest -j16
Test project /ascldap/users/ndellin/trilinos/Trilinos/Build/ATDM-cudadbg/packages/panzer/adapters-stk/example/MixedPoissonExample
    Start 1: PanzerAdaptersSTK_MixedPoissonExample
    Start 2: PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-1
    Start 3: PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-2
1/3 Test #1: PanzerAdaptersSTK_MixedPoissonExample ........................   Passed   26.48 sec
2/3 Test #2: PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-1 ...   Passed   83.60 sec
3/3 Test #3: PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-2 ...   Passed  360.68 sec

100% tests passed, 0 tests failed out of 3

PoissonExample:

bash-4.2$ ctest -j16
Test project /ascldap/users/ndellin/trilinos/Trilinos/Build/ATDM-cudadbg/packages/panzer/adapters-stk/example/PoissonExample
    Start 1: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-1
    Start 2: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-2
    Start 3: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-3
    Start 4: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-4
1/8 Test #2: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-2 ...   Passed   45.27 sec
    Start 5: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-1
2/8 Test #1: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-1 ...   Passed   45.47 sec
    Start 6: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-2
3/8 Test #3: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-3 ...   Passed   70.81 sec
    Start 7: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-3
4/8 Test #4: PanzerAdaptersSTK_PoissonExample-ConvTest-Quad-Order-4 ...   Passed  100.86 sec
    Start 8: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-4
5/8 Test #5: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-1 ....   Passed   65.80 sec
6/8 Test #6: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-2 ....   Passed   72.50 sec
7/8 Test #7: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-3 ....   Passed   77.47 sec
8/8 Test #8: PanzerAdaptersSTK_PoissonExample-ConvTest-Tri-Order-4 ....   Passed   77.83 sec

100% tests passed, 0 tests failed out of 8

trilinos-autotester · 2018-06-01T09:11:45Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 4 Hrs. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 759
Status: PASSED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.9.3
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	2863
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 476
Status: PASSED

Jenkins Parameters

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TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 24
Status: FAILED

Jenkins Parameters

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PULLREQUESTNUM	2863
TEST_REPO_ALIAS	TRILINOS
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TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

CDash Test Results for PR# 2863.

ibaned · 2018-06-01T12:10:59Z

autotesting failed due to TeuchosComm_UnitTestHarness_Parallel_UnitTests_MPI_no_reduce failing in the Intel 17.0.1 build.
The results are fairly strange to me:
https://testing-vm.sandia.gov/cdash/testDetails.php?test=47689635&build=3565608
I'm not sure if @ndellingwood 's changes caused the issue...
@bartlettroscoe any thoughts on this?

bartlettroscoe · 2018-06-01T12:37:19Z

@ibaned, I saw this test TeuchosComm_UnitTestHarness_Parallel_UnitTests_MPI_no_reduce faile while looking at:

https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercount=3&showfilters=1&filtercombine=and&field1=buildname&compare1=63&value1=-test-Trilinos_pullrequest_intel_17.0.1&field2=buildstarttime&compare2=84&value2=2018-06-02&field3=buildstarttime&compare3=83&value3=2018-05-14

I don't understand how these Kokkos changes could impact this test but it is possible since the TeuchosCore subpackage does have an optional dependency on the KokkosCore subpackage.

This is not the only time this test has failed in some builds in all recorded history (about 6 months worth now on testing-vm.sandia.gov/cdash/). If you look at the query:

https://testing-vm.sandia.gov/cdash/queryTests.php?project=Trilinos&filtercombine=and&filtercount=4&showfilters=1&filtercombine=and&field1=testname&compare1=61&value1=TeuchosComm_UnitTestHarness_Parallel_UnitTests_MPI_no_reduce&field2=status&compare2=62&value2=Passed&field3=status&compare3=62&value3=notrun&field4=buildstarttime&compare4=84&value4=2018-06-02

you can see that this test has failed 4 other times. But all 4 of those other failures look to be configuration or other system issues and therefore do not look to be a code problem.

Note that this is a new Intel auto PR build and it may still have some problems. (See #2864).

Let's run the auto PR tests again and see what happens.

bartlettroscoe

@ndellingwood, the code changes look reasonable to me, but I am not sure that I am qualified to review this code. But if this passes the auto PR builds and passes the CUDA tests for the ATDM builds, then I am good with this.

bartlettroscoe · 2018-06-01T12:46:37Z

Wait, I know why the test TeuchosComm_UnitTestHarness_Parallel_UnitTests_MPI_no_reduce failed. You can see it in the output at:

https://testing-vm.sandia.gov/cdash/testDetails.php?test=47689635&build=3565608

which shows:

unning unit tests ...

0. UnitTestHarness_nonRootFails_UnitTest ... Teuchos::GlobalMPISession::GlobalMPISession(): started processor with name ascic158 and rank 1!
[Passed] (0.000121 sec)
...
TEST_0: Pass criteria = Match REGEX {UnitTestHarness_nonRootFails_UnitTest ... .Passed.} [FAILED]

The problem is that the output on rank 0 got jumbled with the startup banner on rank 1. This was just very bad luck.

I will submit a PR to disable the startup banner for this test.

ibaned · 2018-06-01T12:47:28Z

I will submit a PR to disable the startup banner for this test.

Thanks @bartlettroscoe !

…inos#2863) I added --teuchos-suppress-startup-banner to the multi-MPI process tests that grep the output for pass/fail. Otherwise, the ouptut on proc 0 can get jumbled with the statup banner output on other procs. This happened, for example, in the PR testing for PR trilinos#2863. This will stop that from happening in the future.

bartlettroscoe · 2018-06-01T13:20:53Z

FYI: PR #2865 will avoid that Teuchos test from tripping up any future auto PR builds. But it was a rare random failure that should not occur again in this PR.

I set the AT: RETEST label to request testing again. Let's get this sucker merged!

trilinos-autotester · 2018-06-01T13:26:20Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Resetting Testing Status

trilinos-autotester · 2018-06-01T13:28:20Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 763
Status: STARTED

Jenkins Parameters

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JENKINS_BUILD_TYPE	Release
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JENKINS_DO_COMPLEX	OFF
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MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	2863
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 480
Status: STARTED

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MPI_MODULE	sems-openmpi/1.8.7
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TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 28
Status: STARTED

Jenkins Parameters

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PULLREQUESTNUM	2863
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

trilinos-autotester · 2018-06-01T18:54:07Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 763
Status: PASSED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.9.3
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	2863
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 480
Status: PASSED

Jenkins Parameters

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MPI_MODULE	sems-openmpi/1.8.7
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TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	issue-2827
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`7983166`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
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Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 28
Status: PASSED

Jenkins Parameters

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TEST_REPO_ALIAS	TRILINOS
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TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`a69fdc3`

CDash Test Results for PR# 2863.

trilinos-autotester · 2018-06-01T18:54:26Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ bartlettroscoe ]!

trilinos-autotester · 2018-06-01T18:54:35Z

Status Flag 'Pull Request AutoTester' - Pull Request MUST BE MERGED MANUALLY BY Project Team - Master Automerge is disabled (in .cfg file)

bartlettroscoe · 2018-06-01T19:05:18Z

This PR is ready to merge. Can we pull the trigger and merge this?

I added --teuchos-suppress-startup-banner to the multi-MPI process tests that grep the output for pass/fail. Otherwise, the ouptut on proc 0 can get jumbled with the statup banner output on other procs. This happened, for example, in the PR testing for PR #2863. This will stop that from happening in the future.

ndellingwood requested review from ibaned, bartlettroscoe and crtrott June 1, 2018 03:59

ndellingwood mentioned this pull request Jun 1, 2018

New Kokkos, KokkosKernels, and Panzer test failures on CUDA 8.0 and CUDA 9.0 builds after Kokkos and KokkosKernels update #2827

Closed

ndellingwood mentioned this pull request Jun 1, 2018

Fix CudaUVM-related deep_copy kokkos/kokkos#1653

Merged

bartlettroscoe approved these changes Jun 1, 2018

View reviewed changes

bartlettroscoe added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jun 1, 2018

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jun 1, 2018

ibaned merged commit 5f08531 into develop Jun 1, 2018

ndellingwood deleted the issue-2827 branch June 4, 2018 18:35

mhoemmen mentioned this pull request Jun 5, 2018

Update of Trilinos Develop results in failed NaluCFD/Nalu verification runs #2886

Closed

trilinos-autotester mentioned this pull request Jun 22, 2021

MueLu: More alternative coarsening #9321

Merged

kokkos: view_copy fix #2863

kokkos: view_copy fix #2863

Conversation

ndellingwood commented Jun 1, 2018

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Test Name: Trilinos_pullrequest_gcc_4.9.3

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ndellingwood commented Jun 1, 2018

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Test Name: Trilinos_pullrequest_gcc_4.9.3

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Test Name: Trilinos_pullrequest_gcc_4.8.4

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Test Name: Trilinos_pullrequest_gcc_4.9.3

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trilinos-autotester commented Jun 1, 2018

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Test Name: Trilinos_pullrequest_gcc_4.9.3

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