updated changelog for v0.4.0

trinityrnaseq · Sep 20, 2023 · 9e4bd43 · 9e4bd43
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diff --git a/CTAT-LR-fusion b/CTAT-LR-fusion
diff --git a/Changelog.txt b/Changelog.txt
@@ -1,3 +1,7 @@
+v0.4.0, Sep 20, 2023
+- replaces gmap-fusion module with our new ctat-LR-fusion module
+- incl Trinity v2.15.1
+
 v0.3.6 # Nov 7, 2022
 - updates for compatibility with Trinity v2.14.0
 

diff --git a/DISCASM b/DISCASM
diff --git a/example/Makefile b/example/Makefile
@@ -20,7 +20,7 @@ TrinityFusion-UC:
 
 
 TrinityFusion-UC-Singularity:
-	singularity exec -e -B ${CTAT_GENOME_LIB}:/ctat_genome_lib:ro TrinityFusion.simg /usr/local/src/TrinityFusion/TrinityFusion --left_fq reads_1.fq.gz --right_fq reads_2.fq.gz  --output_dir TrinityFusion-UC_outdir-Singularity --chimeric_junctions Chimeric.out.junction --aligned_bam Aligned.out.bam --genome_lib_dir /ctat_genome_lib
+	singularity exec -e -B `pwd`:/data -B ${CTAT_GENOME_LIB}:/ctat_genome_lib:ro TrinityFusion.simg /usr/local/src/TrinityFusion/TrinityFusion --left_fq /data/reads_1.fq.gz --right_fq /data/reads_2.fq.gz  --output_dir /data/TrinityFusion-UC_outdir-Singularity --chimeric_junctions /data/Chimeric.out.junction --aligned_bam /data/Aligned.out.bam --genome_lib_dir /ctat_genome_lib
 
 trinityFusion-UC-Docker:
 	docker run --rm -v `pwd`:/data -v ${CTAT_GENOME_LIB}:/ctat_genome_lib:ro trinityctat/trinityfusion /usr/local/src/TrinityFusion/TrinityFusion --left_fq /data/reads_1.fq.gz --right_fq /data/reads_2.fq.gz  --output_dir /data/TrinityFusion-UC_outdir-Docker --chimeric_junctions /data/Chimeric.out.junction --aligned_bam /data/Aligned.out.bam --genome_lib_dir /ctat_genome_lib