JOSS paper 2024 #491
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JOSS paper 2024 #491
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* implement * Revert "implement" This reverts commit 171505a. * some improvements to the documentation * some more fixes * add install documentation * add more info * update * Update get_started.md * add tutorial * fix * add stubs * update * include the example files * update * update * format * add more info to error message * fix path * add overview page * add diagram * add text * Update overview.md * add development page * refine text * [skip ci] * update * fix * fix * rm get_started * update URL of diagram * fix error * update * update * fix * update * update * rename * rename * update * change to img tags * remove minimal * update images * update * remove old stuff * fix images * fix * make wider * format * format * Update docs/src/development.md Co-authored-by: Erik Faulhaber <44124897+efaulhaber@users.noreply.github.com> * review * rm css * add new picture * update time * move back --------- Co-authored-by: Erik Faulhaber <44124897+efaulhaber@users.noreply.github.com> Co-authored-by: Niklas Neher <73897120+LasNikas@users.noreply.github.com>
Bumps [crate-ci/typos](https://github.com/crate-ci/typos) from 1.18.2 to 1.19.0. - [Release notes](https://github.com/crate-ci/typos/releases) - [Changelog](https://github.com/crate-ci/typos/blob/master/CHANGELOG.md) - [Commits](crate-ci/typos@v1.18.2...v1.19.0) --- updated-dependencies: - dependency-name: crate-ci/typos dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## paper-2024-joss #491 +/- ##
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Coverage 70.57% 70.57%
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Files 66 66
Lines 3827 3827
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Hits 2701 2701
Misses 1126 1126
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* add wrapper * fix tests * fix tests * implement suggestions * quick dirty fix --------- Co-authored-by: Sven Berger <berger.sven@gmail.com>
* Precompute git hash * Store git hash in callbacks * Fix --------- Co-authored-by: Niklas Neher <73897120+LasNikas@users.noreply.github.com>
* Move timers and `@trixi_timeit` to TrixiBase.jl * Require latest version of TrixiBase.jl * Fix tests --------- Co-authored-by: Niklas Neher <73897120+LasNikas@users.noreply.github.com>
* add wrapper * modify kwarg * implement suggestions
* implement `ExtrudeFace` * use `sample_face` in `interpolate_plane_3d` * add docs * add tests * fix bug * create `OpenBoundarySPHSystem` * export OpenBoundarySPHSystem * fix bug * add `tlsph=true` * fix tuple bug * fix typo * fix again * fix for tests * fix layers * calculate particle spacing differently * add show-tests * add `within_boundary_zone` * change `floor` to `ceil` * boundary zone tests * add `evaluate_characteristics` * add tests * add reference functions * add `update_quantities!` * add buffer * add `SystemBuffer` tests * cosmetic change in tests * change `round` to `isapprox` * add update callback * add `UpdateCallback` * add `update_open_boundaries` * fix bugs * add timers * write prescribed quantities * improve dispatching * add example `pipe_flow_2d.jl` * add docs `UpdateCallback` * add `UpdateCallback` * fix typo * apply formatter * modify system buffer * add docstring * add docs * fix tests * fix typos * apply formatter * fix tests * add comment * fix tests * remove update bool * adapt docstring * implement suggestions * fix test * add check if callback is used * add comments in example file * generic types * merge main * undo combining compact support with DEM * remove density and pressure setter * implement suggestions * fix tests * Revert "remove density and pressure setter" This reverts commit 0203a3a. * implement suggestions * rework in- and outflow * rename setter functions * rename function * adapt tests * add docs * rename function * apply formatter * fix tests * fix bug in plot recipes * apply formatter * implement suggestions for `boundary_zone.jl` * rename kwarg * implement suggestions * implement suggestions * modify `check_domain!` * add comments and check for fluid system with buffer * modify error message * fix tests * fix `callback_used` * using Measurements * fix tests * sqrt(eps()) * fix tests again * add doc to `boundary.md` * link single fluid system * fix tests * implement suggestions * fix tests * change the order of functions * modify example * fix tests * fix test again * implement doc suggestions * modify dos * fix typos * implement suggestions * implement suggestions * add EDAC to the example * implement suggestions * modify tests * adapt docs * add `initial_callback_flag` * add to `NEWS.md` and `README.md` * implement suggestions * fix typo
Open Boundaries have been added
* Set to development version 0.1.4 * Update Project.toml
* Fix wrapping for GPU arrays * Adapt `@threaded` macro to work with GPUs * Use new `@threaded` macro * Fix NHS to run GPU code with CPU arrays * Import `@index` from KernelAbstractions.jl For some reason it doesn't run on the CPU otherwise. * Add proper docs for `@threaded` * Fix `foreach_neighbor` * Reformat * Add test for GPU code on the CPU * Fix unit tests * Add unit tests for GPU interaction * Also add tests for GPU versions of `wrap_v` and `wrap_u` * Add kwarg `neighborhood_search` to dam break example * Fix tests * Reformat * Add function `wrap_array` * Fix merge * Fix open boundary code * Implement suggestions * Fix syntax error from merge * Fix `wrap_u` and `wrap_v` for GPU array types * Fix constructor of `BoundarySPHSystem`
…0.9, (keep existing compat) (#551) Co-authored-by: CompatHelper Julia <compathelper_noreply@julialang.org>
Co-authored-by: Erik Faulhaber <44124897+efaulhaber@users.noreply.github.com>
* Add Viscosity Moris * format * fix * implement suggestions * other suggestions * fix equation * format * review comments * fixes * fix * update test * update * fix open boundary * update reference files * update validation criteria * update reference file * new reference files * ups * update ref file * update validation error bounds * update error bound * update error bound * add comment and correct setting of 'v'
* extract changes from #564 * fix
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