snakemake-training

Increasingly complete example bioinformatics workflow

Before you arrive, please make sure you have an account on adroit or another Princeton cluster. We will use ssh and work on the command line. Also make sure you have installed snakemake into a dedicated conda environment, on adroit:

hostname
# adroit5
module load anaconda3/2022.5
conda create -n snake -y
conda activate snake
conda config --env --add channels bioconda
conda config --env --add channels conda-forge
conda install snakemake-minimal -y
snakemake --version
# 7.16.0

You can view the presentation here.