update the deployment CI to add ONTOPORTAL_APIKEY as GH secret

.github/workflows/ci.yaml

@@ -1,80 +1,93 @@
 name: Continuous Integration
- 
+
 on:
   push:
-    branches: [ "main" ]
-    tags: [ "*" ]
+    branches:
+      - "main"
+    tags:
+      - "*"
+
 env:
   KUBECONFIG: .kube/config
   KUBECONFIG_FILE: ${{ secrets.KUBECONFIG }}
+
 jobs:
   build:
     name: "Build Image"
     runs-on: ubuntu-latest
     steps:
       - name: Checkout code
         uses: actions/checkout@v2
+
       - id: generate-image-tag
         name: Generate Image Tag
-        env:
-          ref_name: "${{ github.ref_name }}"
-          head_ref: "${{ github.head_ref }}"
         run: |
-          head_ref="${head_ref/\//-}"
-          ref_name="${head_ref:-${ref_name/main/latest}}"
-          echo "::set-output name=imageTag::${ref_name#v}"
+          head_ref="${GITHUB_HEAD_REF//\//-}"
+          ref_name="${head_ref:-${GITHUB_REF_NAME/main/latest}}"
+          echo "imageTag=${ref_name#v}" >> $GITHUB_ENV
+
       - name: Login to Docker Hub
         uses: docker/login-action@v3
         with:
           registry: ghcr.io
           username: ${{ github.actor }}
           password: ${{ secrets.GITHUB_TOKEN }}
-        
+
       - name: Set up JDK
         uses: actions/setup-java@v2
         with:
-          distribution: 'temurin' 
+          distribution: 'temurin'
           java-version: '11'
 
       - name: Build with Maven
         run: mvn clean install
 
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v3
+
       - name: Build and push
         uses: docker/build-push-action@v5
         with:
           context: ./
           file: ./Dockerfile
           push: true
           tags: |
-            ghcr.io/${{ github.repository }}:${{ steps.generate-image-tag.outputs.imageTag }}
+            ghcr.io/${{ github.repository }}:${{ env.imageTag }}
             ghcr.io/${{ github.repository }}:${{ github.event.pull_request.head.sha || github.sha }}
+
   deploy_main:
-      needs: build
-      if: github.ref == 'refs/heads/main'
-      runs-on: ubuntu-latest
-      steps:
+    needs: build
+    if: github.ref == 'refs/heads/main'
+    runs-on: ubuntu-latest
+    steps:
       - id: generate-image-tag
         name: Generate Image Tag
-        env:
-          ref_name: "${{ github.ref_name }}"
-          head_ref: "${{ github.head_ref }}"
         run: |
-          head_ref="${head_ref/\//-}"
-          ref_name="${head_ref:-${ref_name/main/latest}}"
-          echo "::set-output name=imageTag::${ref_name#v}"
+          head_ref="${GITHUB_HEAD_REF//\//-}"
+          ref_name="${head_ref:-${GITHUB_REF_NAME/main/latest}}"
+          echo "imageTag=${ref_name#v}" >> $GITHUB_ENV
+
       - uses: actions/checkout@v2
-      - run: |
+
+      - name: Set up Kubernetes config
+        run: |
           mkdir -p .kube
-          echo "${{ env.KUBECONFIG_FILE }}" > $KUBECONFIG
-      - uses: stefanprodan/kube-tools@v1
+          echo "${{ secrets.KUBECONFIG }}" > $KUBECONFIG
+
+      - name: Create Kubernetes secret for ONTOPORTAL_APIKEY
+        run: |
+          kubectl create secret generic ontoportal-secret \
+            --from-literal=ONTOPORTAL_APIKEY=${{ secrets.ONTOPORTAL_APIKEY }} \
+            --dry-run=client -o yaml | kubectl apply -f -
+
+      - name: Deploy to Kubernetes
+        uses: stefanprodan/kube-tools@v1
         with:
           helmv3: 3.12.0
           command: |
             kubectl get nodes
             helmv3 repo add api-gateway-deployment https://ts4nfdi.github.io/api-gateway-deployment/
             helmv3 repo update
             helmv3 upgrade ts4nfdi \
-            --install \
-            api-gateway-deployment/api-gateway
+              --install \
+              api-gateway-deployment/api-gateway