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11 Open 6 Closed
11 Open 6 Closed
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Issues list

options to remove only soft clips or hard clips
#19 opened Nov 3, 2022 by jflot
Unexpected inversion behaviour. Removes a few % more reads, not returning the removed reads.
#18 opened Feb 22, 2022 by StarburstCLA
problem using --max 0: keeps soft reads
#17 opened May 11, 2021 by emlec
Remove clipped bases?
#15 opened Jan 5, 2021 by apredeus
3
problem using --max to keep only reads with large clippings
#13 opened Dec 27, 2020 by jflot
Using --max hasn't worked
#12 opened Jun 15, 2020 by eoziolor
2
Clipped reads not removed
#11 opened Jun 9, 2020 by annecmg
zero clipping at the beginning of the read enhancement New feature or request
#8 opened Jan 3, 2019 by avilella
@tseemann
3
Can it handle paired-end data? enhancement New feature or request
#7 opened Jan 2, 2019 by fgvieira
@tseemann
1
min clip length enhancement New feature or request
#6 opened Sep 6, 2018 by Edison2021
@tseemann
6
Underestimation of alignment end position for long-reads enhancement New feature or request
#5 opened Aug 23, 2018 by Adamtaranto
@tseemann
4
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