UPD envrc #202
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UPD envrc #202
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idontgetoutmuch
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Oct 7, 2022
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* analytic * docs * docs * docs * docs * inference * executable docs * more comments, added BayesianModel * Remove MaybeT and use ExceptT * remove vscode and update gitignore * delete additional changes: Failure * delete broken files * update test for enumerator * update models * tips on inference * density * analytic * analytic * more pipes * update docs * linear outliers as in Gen tutorial * update docs * cleanup SMC.hs * more cleanup, and explicit imports * remove Rejection * cleanup * enumerate * binning * comment * explore * nested inference example * found bug in Gamma * debugging * port lazyppl monad into monad-bayes * mh * add conjugacy tests * working branch * tried symbolic * no symbolic * remove reflection * midway: need to finish hmm and enumerator: * update docs * build docs manually * insegel theme * stanford theme * lint * lint * ormulo * nix ormolu fixes: git push * docs * trying to fix mathjax * remove empirical * notebooks * notebooks: sampling * remove helpers * models: lts * models: lts * weighted sampling * formatting * test enumerator * first attempt to fix normalization bug * update tests * working tests: normalNormal goes awry if observations are huge * cleanup * Bayesian in class, and remove LinearWithOutliers * model updates * yaml * prepare for PR * address warnings * review * more warnings fixed * less warnings * update ghc version stated in cabal * remove warnings * fix build * version bump * remove safe * fix merge * fix rmsmc bug you introduced * integrator as MonadInfer * updates * updates * updates * fix the integrator * inference * rope in analyticT * remove integratorT * nix notebooks * notebooks * rmsmc * hoistFirst bug again * hoistFirst bug again * diagrams * fp notebook * remove integratorT * presentation * notebooks * cleanup * docs * docs * presentation * update talk * notebook * works, but readd basic * first working example of marginalization * renaming * continue cleanup * tests: not yet integrated in * tests: integrated in * bayesian pmmh * switch over to new smc * switch over to new smc * improve resampleGeneric sum * independent in Class * parser * nbs * make clean * fix tests * fix tests * fix tests * fix tests * pmmh * withParticles * withParticles * Sequential.Free * Sequential.Free * docs * update nix * cabal format * update nix * fix build * bump changelog and version. bump ghc version to 9.2.3 * update docs and change mcmc so unweighted is not needed * remove sequentialCata * nbs * nbs * add docs and Distribution, Measure, Kernel * merge * updating notebooks * updated notebooks * mhTrans' * fix mh * website * website * bayesian * fix import * fix pmmh example * tui * no streamly * lint * lint * piped mcmc * notebooks * notebooks * docs * fix tui * new notebook * new notebook * Update README.md Co-authored-by: Maria Knorps <maria.knorps@gmail.com> * Update monad-bayes-site/about.md Co-authored-by: Maria Knorps <maria.knorps@gmail.com> * Update monad-bayes-site/about.md Co-authored-by: Maria Knorps <maria.knorps@gmail.com> * Update docs/source/probprog.md Co-authored-by: Maria Knorps <maria.knorps@gmail.com> * Update docs/source/probprog.md Co-authored-by: Maria Knorps <maria.knorps@gmail.com> * Update README.md Co-authored-by: Arnaud Spiwack <arnaud@spiwack.net> * Remove notebook's checkpoints and add them to .gitignore (#200) * Update monad-bayes-site/about.md * Maria/website adjustments (#201) * Start working on site * Fix formatting * revert flake.nix * clean up the PR files * Do not change flake.lock * UPD readme with clearer instruction of notebooks run * chore(deps): bump DeterminateSystems/update-flake-lock from 13 to 14 (#193) Bumps [DeterminateSystems/update-flake-lock](https://github.com/DeterminateSystems/update-flake-lock) from 13 to 14. - [Release notes](https://github.com/DeterminateSystems/update-flake-lock/releases) - [Commits](DeterminateSystems/update-flake-lock@v13...v14) --- updated-dependencies: - dependency-name: DeterminateSystems/update-flake-lock dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * flake.lock: Update (#195) Flake lock file updates: • Updated input 'jupyter-flake': 'git+https://github.com/tweag/monad-bayes?ref=notebooks&rev=a123b9352203dcd245bbd06a3139edb3c6f653ae' (2022-08-30) → 'git+https://github.com/tweag/monad-bayes?ref=notebooks&rev=4ef694502bf20a20790a0ad39a7db89750730dc2' (2022-09-23) • Added input 'jupyter-flake/flake-compat': 'github:edolstra/flake-compat/b4a34015c698c7793d592d66adbab377907a2be8' (2022-04-19) • Added input 'jupyter-flake/haskell-nix-utils': 'github:TerrorJack/haskell-nix-utils/f6fafb5f7ad7ab100bc897e9a278caabab38505d' (2022-07-12) • Added input 'jupyter-flake/haskell-nix-utils/cabal-extras': 'github:phadej/cabal-extras/7a8f07aafcdbbeaeefcbb5f7e8e0e12f91b59fcb' (2022-05-25) • Added input 'jupyter-flake/haskell-nix-utils/cabal-fmt': 'github:phadej/cabal-fmt/6651ffdccdfce71330f2b5cde9f8f23b616abf82' (2021-08-30) • Added input 'jupyter-flake/haskell-nix-utils/ekg-json': 'github:pepeiborra/ekg-json/7a0af7a8fd38045fd15fb13445bdcc7085325460' (2022-05-02) • Added input 'jupyter-flake/haskell-nix-utils/eventlog2html': 'github:mpickering/eventlog2html/e959fdf879c2b404a9843d962b726af499b27cb8' (2021-12-06) • Added input 'jupyter-flake/haskell-nix-utils/gentle-introduction': 'github:phadej/gentle-introduction/949a99b4d2d8c556bdd455f0e4c4d94f0402ea63' (2022-05-18) • Added input 'jupyter-flake/haskell-nix-utils/ghcid': 'github:ndmitchell/ghcid/f48626bf5b64067a84b644bcc56afac686046966' (2022-03-26) • Added input 'jupyter-flake/haskell-nix-utils/haskell-language-server': 'github:haskell/haskell-language-server/445192e21daa4f4973e60a13e748ffa910819e79' (2022-07-11) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix': 'github:input-output-hk/haskell.nix/66ae51e640c624519ba1bb1559a9ef2deccd9726' (2022-07-12) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/HTTP': 'github:phadej/HTTP/9bc0996d412fef1787449d841277ef663ad9a915' (2016-01-01) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/cabal-32': 'github:haskell/cabal/48bf10787e27364730dd37a42b603cee8d6af7ee' (2020-10-26) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/cabal-34': 'github:haskell/cabal/942639c18c0cd8ec53e0a6f8d120091af35312cd' (2021-12-24) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/cabal-36': 'github:haskell/cabal/f27667f8ec360c475027dcaee0138c937477b070' (2022-01-08) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/cardano-shell': 'github:input-output-hk/cardano-shell/9392c75087cb9a3d453998f4230930dea3a95725' (2020-12-21) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/flake-utils': 'github:numtide/flake-utils/3cecb5b042f7f209c56ffd8371b2711a290ec797' (2022-02-07) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/ghc-8.6.5-iohk': 'github:input-output-hk/ghc/95713a6ecce4551240da7c96b6176f980af75cae' (2020-09-24) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hackage': 'github:input-output-hk/hackage.nix/f596b29505d4a1b5d561c7c270a9c3b147534468' (2022-07-12) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hpc-coveralls': 'github:sevanspowell/hpc-coveralls/14df0f7d229f4cd2e79f8eabb1a740097fdfa430' (2020-12-09) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra': 'github:NixOS/hydra/28b682b85b7efc5cf7974065792a1f22203a5927' (2022-03-10) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra/nix': 'github:NixOS/nix/a1cd7e58606a41fcf62bf8637804cf8306f17f62' (2022-01-24) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra/nix/lowdown-src': 'github:kristapsdz/lowdown/d2c2b44ff6c27b936ec27358a2653caaef8f73b8' (2021-10-06) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra/nix/nixpkgs': 'github:NixOS/nixpkgs/82891b5e2c2359d7e58d08849e4c89511ab94234' (2021-09-28) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra/nix/nixpkgs-regression': 'github:NixOS/nixpkgs/215d4d0fd80ca5163643b03a33fde804a29cc1e2' (2022-01-24) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra/nixpkgs': follows 'jupyter-flake/haskell-nix-utils/haskell-nix/hydra/nix/nixpkgs' • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/nix-tools': 'github:input-output-hk/nix-tools/e109c94016e3b6e0db7ed413c793e2d4bdb24aa7' (2022-04-08) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/nixpkgs': follows 'jupyter-flake/haskell-nix-utils/haskell-nix/nixpkgs-unstable' • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/nixpkgs-2003': 'github:NixOS/nixpkgs/1db42b7fe3878f3f5f7a4f2dc210772fd080e205' (2021-05-03) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/nixpkgs-2105': 'github:NixOS/nixpkgs/530a53dcbc9437363471167a5e4762c5fcfa34a1' (2022-02-19) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/nixpkgs-2111': 'github:NixOS/nixpkgs/0a58eebd8ec65ffdef2ce9562784123a73922052' (2022-03-31) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/nixpkgs-unstable': 'github:NixOS/nixpkgs/30d3d79b7d3607d56546dd2a6b49e156ba0ec634' (2022-03-25) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/old-ghc-nix': 'github:angerman/old-ghc-nix/af48a7a7353e418119b6dfe3cd1463a657f342b8' (2021-09-08) • Added input 'jupyter-flake/haskell-nix-utils/haskell-nix/stackage': 'github:input-output-hk/stackage.nix/cfa19244bdb8ac3562780a0199fccae1a9220b43' (2022-07-12) • Added input 'jupyter-flake/haskell-nix-utils/hindent': 'github:mihaimaruseac/hindent/4c2ea034f4365cd784539f223282907c9e734fba' (2022-06-26) • Added input 'jupyter-flake/haskell-nix-utils/hooglite': 'github:phadej/hooglite/18856375932f6744cac7849bd1e816538537863f' (2021-12-29) • Added input 'jupyter-flake/haskell-nix-utils/pointfree': 'github:bmillwood/pointfree/2fb1b2e1a48b7297b4f157eb4f3085ad6fa40443' (2021-04-10) • Added input 'jupyter-flake/haskell-nix-utils/warp-wo-x509': 'github:phadej/warp-wo-x509/98648f7520d228e6a14747223f0bbd68620b9318' (2021-11-14) • Added input 'jupyter-flake/haskell-nix-utils/weeder': 'github:ocharles/weeder/c58ed2a8c66dcf0b469f8343efb6b6f61c7c40f3' (2022-05-22) • Added input 'jupyter-flake/jupyter-flake': 'git+https://github.com/tweag/monad-bayes?ref=notebooks&rev=a123b9352203dcd245bbd06a3139edb3c6f653ae' (2022-08-30) • Added input 'jupyter-flake/jupyter-flake/flake-utils': 'github:numtide/flake-utils/c0e246b9b83f637f4681389ecabcb2681b4f3af0' (2022-08-07) • Added input 'jupyter-flake/jupyter-flake/jupyterWith': 'github:tweag/jupyterWith/0b7f2e843f023c89283daf53eabce322efc9ca7c' (2022-08-29) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/flake-compat': 'github:teto/flake-compat/8e15c6e3c0f15d0687a2ab6ae92cc7fab896bfed' (2021-09-15) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/flake-utils': 'github:numtide/flake-utils/c0e246b9b83f637f4681389ecabcb2681b4f3af0' (2022-08-07) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell': 'github:gibiansky/IHaskell/53f8e0773822ddf2cd392309ba27c8ff8e30202e' (2022-08-26) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/flake-compat': 'github:edolstra/flake-compat/12c64ca55c1014cdc1b16ed5a804aa8576601ff2' (2021-08-02) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/flake-utils': 'github:numtide/flake-utils/7e5bf3925f6fbdfaf50a2a7ca0be2879c4261d19' (2021-09-13) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls': 'github:haskell/haskell-language-server/311107eabbf0537e0c192b2c377d282505b4eff1' (2021-11-18) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/flake-compat': 'github:edolstra/flake-compat/12c64ca55c1014cdc1b16ed5a804aa8576601ff2' (2021-08-02) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/flake-utils': 'github:numtide/flake-utils/997f7efcb746a9c140ce1f13c72263189225f482' (2021-08-20) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/gitignore': 'github:hercules-ci/gitignore.nix/211907489e9f198594c0eb0ca9256a1949c9d412' (2021-01-26) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/nixpkgs': 'github:NixOS/nixpkgs/5e47a07e9f2d7ed999f2c7943b0896f5f7321ca3' (2021-09-06) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/pre-commit-hooks': 'github:cachix/pre-commit-hooks.nix/397f0713d007250a2c7a745e555fa16c5dc8cadb' (2021-06-29) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/pre-commit-hooks/flake-utils': follows 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/flake-utils' • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/pre-commit-hooks/nixpkgs': follows 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/hls/nixpkgs' • Added input 'jupyter-flake/jupyter-flake/jupyterWith/ihaskell/nixpkgs': 'github:NixOS/nixpkgs/5f0194220f2402b06f7f79bba6351895facb5acb' (2021-10-18) • Added input 'jupyter-flake/jupyter-flake/jupyterWith/nixpkgs': 'github:nixos/nixpkgs/eabc38219184cc3e04a974fe31857d8e0eac098d' (2022-08-02) • Added input 'jupyter-flake/jupyter-flake/nixpkgs': 'github:NixOS/nixpkgs/ce6aa13369b667ac2542593170993504932eb836' (2022-05-30) • Removed input 'jupyter-flake/jupyterWith' • Removed input 'jupyter-flake/jupyterWith/flake-compat' • Removed input 'jupyter-flake/jupyterWith/flake-utils' • Removed input 'jupyter-flake/jupyterWith/ihaskell' • Removed input 'jupyter-flake/jupyterWith/ihaskell/flake-compat' • Removed input 'jupyter-flake/jupyterWith/ihaskell/flake-utils' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/flake-compat' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/flake-utils' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/gitignore' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/nixpkgs' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/pre-commit-hooks' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/pre-commit-hooks/flake-utils' • Removed input 'jupyter-flake/jupyterWith/ihaskell/hls/pre-commit-hooks/nixpkgs' • Removed input 'jupyter-flake/jupyterWith/ihaskell/nixpkgs' • Removed input 'jupyter-flake/jupyterWith/nixpkgs' • Updated input 'jupyter-flake/nixpkgs': 'github:NixOS/nixpkgs/ce6aa13369b667ac2542593170993504932eb836' (2022-05-30) → 'github:NixOS/nixpkgs/2da64a81275b68fdad38af669afeda43d401e94b' (2022-09-01) • Added input 'jupyter-flake/pre-commit-hooks': 'github:cachix/pre-commit-hooks.nix/8cb8ea5f1c7bc2984f460587fddd5f2e558f6eb8' (2022-08-18) • Added input 'jupyter-flake/pre-commit-hooks/flake-utils': follows 'jupyter-flake/flake-utils' • Added input 'jupyter-flake/pre-commit-hooks/nixpkgs': follows 'jupyter-flake/nixpkgs' • Updated input 'nixpkgs': 'github:NixOS/nixpkgs/2da64a81275b68fdad38af669afeda43d401e94b' (2022-09-01) → 'github:NixOS/nixpkgs/ae1dc133ea5f1538d035af41e5ddbc2ebcb67b90' (2022-09-22) • Updated input 'pre-commit-hooks': 'github:cachix/pre-commit-hooks.nix/8cb8ea5f1c7bc2984f460587fddd5f2e558f6eb8' (2022-08-18) → 'github:cachix/pre-commit-hooks.nix/60cad1a326df17a8c6cf2bb23436609fdd83024e' (2022-09-13) Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com> * flake.lock: Update (#199) Flake lock file updates: • Updated input 'nixpkgs': 'github:NixOS/nixpkgs/ae1dc133ea5f1538d035af41e5ddbc2ebcb67b90' (2022-09-22) → 'github:NixOS/nixpkgs/10ecda252ce1b3b1d6403caeadbcc8f30d5ab796' (2022-09-30) • Updated input 'pre-commit-hooks': 'github:cachix/pre-commit-hooks.nix/60cad1a326df17a8c6cf2bb23436609fdd83024e' (2022-09-13) → 'github:cachix/pre-commit-hooks.nix/2a4f1cfaa01b8b31edc7d3004454c4a0c38d50d8' (2022-09-30) Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com> * Update nix flakes lock * UPD envrc (#202) * UPD envrc * Update .envrc Co-authored-by: idontgetoutmuch <dominic@steinitz.org> * Notebooks: Introduction.ipynb adjustments (#205) * Merge flakes * The one flake to rule them all * Fix plotCdf function & add central histogram point * DEL Introduction notebook form notebooks lvl UPD html rendering of the introduction notebook * Update nix flakes lock Co-authored-by: Dominic Steinitz <dominic@steinitz.org> * DEL duplicate notebooks in the folder * resolve warnings - shadowed variables and unused imports * DEL Wiener process (#215) * Manual update of flake.lock Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: Reuben Cohn-Gordon <reubencohn-gordon@Reubens-MacBook-Air.local> Co-authored-by: System Administrator <root@Reubens-MacBook-Air.local> Co-authored-by: Maria Knorps <maria.knorps@gmail.com> Co-authored-by: Arnaud Spiwack <arnaud@spiwack.net> Co-authored-by: mknorps <maria.knorps@tweag.io> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com> Co-authored-by: idontgetoutmuch <dominic@steinitz.org>
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Update of
.envrcwith working flake command.Make sure that you have a recent (>=2.30) version of direnv.