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Lskatz unittests #28

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Lskatz unittests #28

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Commits on Oct 15, 2020

  1. Create unittests.yml

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    lskatz authored Oct 15, 2020
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  2. Update unittests.yml

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    lskatz authored Oct 15, 2020
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  3. just v2.7

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    lskatz authored Oct 15, 2020
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  4. wget single URL via efetch

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    lskatz authored Oct 15, 2020
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  5. get fastq.gz; run geotyphi step

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    lskatz authored Oct 15, 2020
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  6. Update unittests.yml

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    lskatz authored Oct 15, 2020
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  7. fix ct18 fasta file

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    lskatz authored Oct 15, 2020
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  8. samtools -T

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    lskatz authored Oct 15, 2020
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  9. Two cpus to reflect two cpus per github runner

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    lskatz authored Oct 15, 2020
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  10. samtools stdout with -

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    lskatz authored Oct 15, 2020
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  11. fixed CT18.fasta index name

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    lskatz authored Oct 15, 2020
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  12. separating out steps with their own names for debugging

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    lskatz authored Oct 15, 2020
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  13. samtools view -h

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    lskatz authored Oct 15, 2020
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  14. remove samtools view -

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    lskatz authored Oct 15, 2020
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  15. samtools fix

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    lskatz authored Oct 15, 2020
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  16. name of results file

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    lskatz authored Oct 15, 2020
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  17. Testing on output values

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    lskatz authored Oct 15, 2020
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  18. speed up apt install with --no-install-recommends

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    lskatz authored Oct 15, 2020
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  19. fix some spacing in the commenting

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    lskatz authored Oct 15, 2020
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  20. better debugging statements

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    lskatz authored Oct 15, 2020
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  21. Update unittests.yml

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    lskatz authored Oct 15, 2020
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