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Add GH action workflow for integration tests #2670

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merged 6 commits into from
Nov 21, 2024

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@krishnaa05 krishnaa05 commented Nov 13, 2024

Link to JIRA ticket if there is one: GQE-351

New Features

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

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Please find the ci env pod logs here

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filepath $$\textcolor{#23d18b}{\tt{passed}}$$ $$\textcolor{#f14c4c}{\tt{failed}}$$ $$\textcolor{#ffa500}{\tt{skipped}}$$ SUBTOTAL
$$\textcolor{#23d18b}{\tt{tests/test\_oauth2.py}}$$ $$\textcolor{#23d18b}{\tt{15}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{15}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_centralized\_auth.py}}$$ $$\textcolor{#23d18b}{\tt{16}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{16}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_graph\_submit\_and\_query.py}}$$ $$\textcolor{#23d18b}{\tt{13}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{14}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_data\_upload.py}}$$ $$\textcolor{#23d18b}{\tt{8}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{9}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_guppy\_service.py}}$$ $$\textcolor{#23d18b}{\tt{8}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{8}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_presigned\_url.py}}$$ $$\textcolor{#23d18b}{\tt{7}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{7}}$$
$$\textcolor{#f14c4c}{\tt{tests/test\_audit\_service.py}}$$ $$\textcolor{#23d18b}{\tt{4}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#f14c4c}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_requestor.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_dbgap.py}}$$ $$\textcolor{#23d18b}{\tt{4}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_drs\_endpoint.py}}$$ $$\textcolor{#23d18b}{\tt{4}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{4}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_ras\_authn.py}}$$ $$\textcolor{#23d18b}{\tt{3}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{3}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_study\_viewer.py}}$$ $$\textcolor{#23d18b}{\tt{3}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{3}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_user\_token.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_discoverypage.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_workspace.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_indexing\_page.py}}$$ $$\textcolor{#23d18b}{\tt{2}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{2}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_oidc\_client.py}}$$ $$\textcolor{#23d18b}{\tt{2}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{2}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_login\_page.py}}$$ $$\textcolor{#23d18b}{\tt{2}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{2}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_client\_credentials.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_homepage.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_pfb\_export.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_manifest\_service.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_metadata\_ingestion.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_etl.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_google\_data\_access.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_gen3ff\_landing\_page.py}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{2}}$$ $$\textcolor{#ffa500}{\tt{2}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_register\_user.py}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{2}}$$ $$\textcolor{#ffa500}{\tt{2}}$$
$$\textcolor{#f14c4c}{\tt{tests/test\_aggregate\_mds.py}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$
$$\textcolor{#f14c4c}{\tt{tests/test\_gen3client.py}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$
$$\textcolor{#f14c4c}{\tt{TOTAL}}$$ $$\textcolor{#23d18b}{\tt{110}}$$ $$\textcolor{#f14c4c}{\tt{3}}$$ $$\textcolor{#ffa500}{\tt{7}}$$ $$\textcolor{#f14c4c}{\tt{120}}$$

Please find the detailed integration test report here

Please find the ci env pod logs here

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filepath $$\textcolor{#23d18b}{\tt{passed}}$$ SUBTOTAL
$$\textcolor{#23d18b}{\tt{tests/test\_audit\_service.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_aggregate\_mds.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_gen3client.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{TOTAL}}$$ $$\textcolor{#23d18b}{\tt{7}}$$ $$\textcolor{#23d18b}{\tt{7}}$$

Please find the detailed integration test report here

Please find the ci env pod logs here

Copy link

filepath $$\textcolor{#23d18b}{\tt{passed}}$$ SUBTOTAL
$$\textcolor{#23d18b}{\tt{tests/test\_homepage.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{TOTAL}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#23d18b}{\tt{1}}$$

Please find the detailed integration test report here

Please find the ci env pod logs here

@AidanHilt AidanHilt merged commit 69e15ba into master Nov 21, 2024
5 of 6 checks passed
@AidanHilt AidanHilt deleted the chore/add_gh_action_integration_tests branch November 21, 2024 17:07
BinamB pushed a commit that referenced this pull request Dec 4, 2024
* Add GH action workflow for integration tests

* Update integration_tests.yaml

* Reverting Jenkinsfile and removing integrationtests entry

* Update Jenkinsfile

---------

Co-authored-by: Hara Prasad <haraprasadj@uchicago.edu>
ajoaugustine added a commit that referenced this pull request Jan 7, 2025
* (Chore): Improve Single Table Migration Job Script

* add param for creds

* Add priority class

* Add comments

* Making ES7 domain default (#2655)

* Making ES7 domain default

* updating es proxy script

* Update README.md (#2662)

update broken link

* adding changes for new al image changes (#2661)

* adding changes for new al image changes

* updating alembic logic to work with the new al images that manage alembic through poetry (#2663)

* fix to include special characters in db name (#2664)

* updating userdb job to work with new al images (#2665)

* Update web_whitelist

* Feat/team project cost tracking (#2658)

* Setting up migration to new karpenter CRDs

* Adding some references missed earlier

* Really can't stop screwing up

* Not even sure why it's working this way

* Let's try this, this should help

* Let's make sure this part works

* Let's try this

* Let's try this too

* Let's check the decoding

* Fixing a silly parentheses issue

* Fixing some other naming issues

* I think we can't do decoding this early in the process

* Trying wrapping in quotes

* Let's try just cutting some stuff

* Need to update the deleted sensor

* Think underscores are also a no-go

* No decoding

* Could the decoding be the issue?

* Adding the selector for 1.31 AMIs

* Changing the tag name

* Fixing the cleanup jobs

* I think we may just need to change the deletion order

* modifying gdcdb create job  (#2668)

* modifying gdcdb create job so it is backwards compatible and works with the new image that utilizes poetry for its virtual environments

* Update gdcdb-create-job.yaml

* Update squid.conf (#2641)

Update squid.conf to work with new AL based squid image.

* Adding "poetry run"  (#2673)

* adding updates so these jobs will work with our new AL based environments that use poetry to manage their virtual environments

* removing old squid file from cloud auto as it now lives in "base_images" repo" (#2675)

* Add GH action workflow for integration tests (#2670)

* Add GH action workflow for integration tests

* Update integration_tests.yaml

* Reverting Jenkinsfile and removing integrationtests entry

* Update Jenkinsfile

---------

Co-authored-by: Hara Prasad <haraprasadj@uchicago.edu>

* fix: use /auth/request instead of /auth/mapping Arborist endpoint (#2677)

* Update Dockerfile env key=value format

* Update Dockerfile

* Revert "Update Dockerfile"

This reverts commit 4c445dd.

* Revert "Update Dockerfile env key=value format"

This reverts commit a2ba4fc.

---------

Co-authored-by: EliseCastle23 <109446148+EliseCastle23@users.noreply.github.com>
Co-authored-by: smvgarcia <111767892+smvgarcia@users.noreply.github.com>
Co-authored-by: Ajo Augustine <ajoaugustine@gmail.com>
Co-authored-by: emalinowski <emalinowski@uchicago.edu>
Co-authored-by: Aidan Hilt <11202897+AidanHilt@users.noreply.github.com>
Co-authored-by: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com>
Co-authored-by: Hara Prasad <haraprasadj@uchicago.edu>
Co-authored-by: pieterlukasse <pieterlukasse@gmail.com>
Co-authored-by: Maribelle Hannah Gomez <maribellehgomez@gmail.com>
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4 participants