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Release 6.1.0 #143

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merged 4 commits into from
Mar 13, 2024
Merged

Release 6.1.0 #143

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a9f4283
Update CHANGELOG.md
yashpatel6 Mar 13, 2024
058fc6f
Bump version in nextflow.config
yashpatel6 Mar 13, 2024
d04405d
Update version in test
yashpatel6 Mar 13, 2024
f083b8d
Update configtest-F16.json with version
yashpatel6 Mar 13, 2024
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -8,6 +8,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
---

## [Unreleased]

---

## [6.1.0] - 2024-03-12
### Removed
- Local versions of modularized functions
### Added
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -5,5 +5,5 @@ manifest {
name = "call-sSV"
author = "Yu Pan, Ghouse Mohammed, Mohammed Faizal Eeman Mootor"
description = "A pipeline to call somatic SVs utilizing Delly and Manta"
version = "6.0.0"
version = "6.1.0"
}
12 changes: 6 additions & 6 deletions test/configtest-F16.json
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Expand Up @@ -41,7 +41,7 @@
"author": "Yu Pan, Ghouse Mohammed, Mohammed Faizal Eeman Mootor",
"description": "A pipeline to call somatic SVs utilizing Delly and Manta",
"name": "call-sSV",
"version": "6.0.0"
"version": "6.1.0"
},
"params": {
"algorithm": [
Expand Down Expand Up @@ -72,7 +72,7 @@
]
}
},
"log_output_dir": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z",
"log_output_dir": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z",
"mad_cutoff": "15",
"manta_version": "1.6.0",
"map_qual": "20",
Expand All @@ -82,7 +82,7 @@
"min_cpus": "1",
"min_memory": "1 MB",
"output_dir": "/tmp/outputs",
"output_dir_base": "/tmp/outputs/call-sSV-6.0.0/610093",
"output_dir_base": "/tmp/outputs/call-sSV-6.1.0/610093",
"pipeval_version": "4.0.0-rc.2",
"proc_resource_params": {
"call_sSV_Delly": {
Expand Down Expand Up @@ -360,18 +360,18 @@
},
"report": {
"enabled": true,
"file": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z/nextflow-log/report.html"
"file": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z/nextflow-log/report.html"
},
"sample": [
"610093"
],
"timeline": {
"enabled": true,
"file": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z/nextflow-log/timeline.html"
"file": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z/nextflow-log/timeline.html"
},
"trace": {
"enabled": true,
"file": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z/nextflow-log/trace.txt"
"file": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z/nextflow-log/trace.txt"
},
"tz": "sun.util.calendar.ZoneInfo[id=\"UTC\",offset=0,dstSavings=0,useDaylight=false,transitions=0,lastRule=null]",
"workDir": "/scratch/523557",
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