Run sfc_climo_gen utility on Hera

util/sfc_climo_gen/readme.md

@@ -2,3 +2,6 @@ Run the sfc_climo_gen program stand-alone on WCOSS2 using
 pre-exiting 'grid' and 'orography' files.
 
 Outputs surface fields such as soil and vegetation type.
+
+Set the configuration variables in sfc_gen.sh. Then
+run using the machine specific driver script.

util/sfc_climo_gen/run.hera.sh

@@ -0,0 +1,29 @@
+#!/bin/bash
+
+#------------------------------------------------------------
+# Run the sfc_climo_gen program stand-alone on Hera using
+# pre-exiting 'grid' and 'orography files.
+#
+# Set the configuration variables in sfc_gen.sh. Then
+# run this script as follows: 'sbatch $script'
+#------------------------------------------------------------
+
+#SBATCH -J sfc_climo_gen
+#SBATCH -A fv3-cpu
+#SBATCH --open-mode=truncate
+#SBATCH -o log
+#SBATCH -e log
+#SBATCH --nodes=1 --ntasks-per-node=24
+#SBATCH --partition=bigmem
+#SBATCH -q debug
+#SBATCH -t 00:10:00
+
+set -x
+
+export APRUN_SFC="srun"
+
+export BASE_DIR=$SLURM_SUBMIT_DIR/../..
+
+$SLURM_SUBMIT_DIR/sfc_gen.sh
+
+exit

util/sfc_climo_gen/run.wcoss2.sh

@@ -4,7 +4,8 @@
 # Run the sfc_climo_gen program stand-alone on WCOSS2 using
 # pre-exiting 'grid' and 'orography files.
 #
-# To run, type: 'qsub $script'
+# Set the configuration variables in sfc_gen.sh. Then,
+# run this script as follows: 'qsub $script'
 #------------------------------------------------------------
 
 #PBS -o log
@@ -22,88 +23,6 @@ export APRUN_SFC="mpiexec -n 24 -ppn 24 -cpu-bind core"
 
 export BASE_DIR=$PBS_O_WORKDIR/../..
 
-source ${BASE_DIR}/sorc/machine-setup.sh > /dev/null 2>&1
-module use ${BASE_DIR}/modulefiles
-module load build.$target.intel
-module list
-
-#-------------------------------------
-# Set model resolution.
-#-------------------------------------
-
-export res=384
-
-#-------------------------------------
-# Where the model "grid", "mosaic" and "oro" files reside.
-#-------------------------------------
-
-export FIX_FV3=${BASE_DIR}/fix/orog/C${res}
-
-#-------------------------------------
-# Uncomment for regional grids.
-#-------------------------------------
-
-##HALO=3
-##export GRIDTYPE=regional
-
-#-------------------------------------------------------------
-# Choose which soil type and vegetation type data to use.
-#
-# For viirs-based vegetation type data, set to:
-#   1) "viirs.igbp.0.1" for global 0.10-deg data
-#   2) "viirs.igbp.0.05" for global 0.05-deg data
-#   3) "viirs.igbp.0.03" for global 0.03-deg data
-#   4) "viirs.igbp.conus.30s" for CONUS 30s data
-#   4) "viirs.igbp.nh.30s" for NH 30s data
-#   4) "viirs.igbp.30s" for global 30s data
-#
-# For the modis-based vegetation data, set to:
-#   1) "modis.igbp.0.05" for global 0.05-deg data
-#   2) "modis.igbp.0.03" for global 0.03-deg data
-#   3) "modis.igbp.conus.30s" for CONUS 30s data
-#   4) "modis.igbp.nh.30s" for NH 30s data
-#   5) "modis.igbp.30s" for global 30s data
-#
-# For STATSGO soil type data
-#   1) "statsgo.0.05" for global 0.05-deg data
-#   2) "statsgo.0.03" for global 0.03-deg data
-#   3) "statsgo.conus.30s" for CONUS 30s data
-#   4) "statsgo.nh.30s" for NH 30s data
-#   5) "statsgo.30s" for global 30s data
-#
-# For Beijing Norm. Univ. soil type data
-#   1) "bnu.30s" for global 30s data
-#-------------------------------------------------------------
-
-export veg_type_src="modis.igbp.0.05"
-
-export soil_type_src="statsgo.0.05"
-
-#-------------------------------------
-# Set working directory and directory where output files will be saved.
-#-------------------------------------
-
-export WORK_DIR=/lfs/h2/emc/stmp/$LOGNAME/work.sfc
-export SAVE_DIR=/lfs/h2/emc/stmp/$LOGNAME/sfc.C${res}
-
-#-------------------------------------
-# Should not have to touch anything below here.
-#-------------------------------------
-
-if [[ $GRIDTYPE = "regional" ]]; then
-  HALO=$(( $HALO + 1 ))
-  export HALO
-  ln -fs $FIX_FV3/C${res}_grid.tile7.halo${HALO}.nc $FIX_FV3/C${res}_grid.tile7.nc
-  ln -fs $FIX_FV3/C${res}_oro_data.tile7.halo${HALO}.nc $FIX_FV3/C${res}_oro_data.tile7.nc
-fi
-
-export input_sfc_climo_dir=${BASE_DIR}/fix/sfc_climo
-
-ulimit -a
-ulimit -s unlimited
-
-rm -fr $WORK_DIR $SAVE_DIR
-
-${BASE_DIR}/ush/sfc_climo_gen.sh
+$PBS_O_WORKDIR/sfc_gen.sh
 
 exit

util/sfc_climo_gen/sfc_gen.sh

@@ -0,0 +1,94 @@
+#!/bin/bash
+
+#-----------------------------------------------------------------------
+#
+# This script is run by the machine specific driver script.
+#
+# Set the following variables:
+#
+# res      - Grid resolution. Example: 384 or 384.mx025.
+#
+# GRIDTYPE - set to 'regional' for regional grids. Otherwise,
+#            comment out.
+#
+# HALO     - The number of halo rows/cols. Only for regional grids.
+#            Otherwise, comment out.
+#
+# WORK_DIR - Working directory.
+#
+# SAVE_DIR - Directory where the surface files will be saved.
+#
+# veg_type_src - Input vegetation type data. Choices are:
+#                  For viirs-based vegetation type data, set to:
+#                  - "viirs.igbp.0.1" for global 0.10-deg data
+#                  - "viirs.igbp.0.05" for global 0.05-deg data
+#                  - "viirs.igbp.0.03" for global 0.03-deg data
+#                  - "viirs.igbp.conus.30s" for CONUS 30s data
+#                  - "viirs.igbp.nh.30s" for NH 30s data
+#                  - "viirs.igbp.30s" for global 30s data
+#                  For the modis-based vegetation data, set to:
+#                  - "modis.igbp.0.05" for global 0.05-deg data
+#                  - "modis.igbp.0.03" for global 0.03-deg data
+#                  - "modis.igbp.conus.30s" for CONUS 30s data
+#                  - "modis.igbp.nh.30s" for NH 30s data
+#                  - "modis.igbp.30s" for global 30s data
+#
+# soil_type_src - Input soil type data. Choices are:
+#                   For STATSGO soil type data
+#                   - "statsgo.0.05" for global 0.05-deg data
+#                   - "statsgo.0.03" for global 0.03-deg data
+#                   - "statsgo.conus.30s" for CONUS 30s data
+#                   - "statsgo.nh.30s" for NH 30s data
+#                   - "statsgo.30s" for global 30s data
+#                   For Beijing Norm. Univ. soil type data
+#                   - "bnu.30s" for global 30s data
+#-----------------------------------------------------------------------
+
+#export res=384
+export res=384.mx025
+
+##HALO=3
+##export GRIDTYPE=regional
+
+export veg_type_src="modis.igbp.0.05"
+
+export soil_type_src="statsgo.0.05"
+
+export WORK_DIR=/lfs/h2/emc/stmp/$LOGNAME/work.sfc
+export SAVE_DIR=/lfs/h2/emc/stmp/$LOGNAME/sfc.C${res}
+
+#------------------------------------------------------------------------
+#------------------------------------------------------------------------
+# Should not have to touch anything below here.
+#------------------------------------------------------------------------
+#------------------------------------------------------------------------
+
+export FIX_FV3=${BASE_DIR}/fix/orog/C${res}
+
+if [[ $GRIDTYPE = "regional" ]]; then
+  HALO=$(( $HALO + 1 ))
+  export HALO
+  ln -fs $FIX_FV3/C${res}_grid.tile7.halo${HALO}.nc $FIX_FV3/C${res}_grid.tile7.nc
+  ln -fs $FIX_FV3/C${res}_oro_data.tile7.halo${HALO}.nc $FIX_FV3/C${res}_oro_data.tile7.nc
+fi
+
+res2=${res//".mx"*}
+export mosaic_file=$FIX_FV3/C${res2}_mosaic.nc
+
+export input_sfc_climo_dir=${BASE_DIR}/fix/sfc_climo
+
+ulimit -a 
+ulimit -s unlimited
+
+source ${BASE_DIR}/sorc/machine-setup.sh > /dev/null 2>&1
+module use ${BASE_DIR}/modulefiles
+module load build.$target.intel
+module list
+
+rm -fr $WORK_DIR $SAVE_DIR
+
+export APRUN
+
+${BASE_DIR}/ush/sfc_climo_gen.sh
+
+exit