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fixes for coupled model P7 restart tests and Update build system and regression testing on Acorn (PR#809) #819

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merged 30 commits into from
Sep 24, 2021
Merged

fixes for coupled model P7 restart tests and Update build system and regression testing on Acorn (PR#809) #819

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bc8fa72
WCOSS2 TDS (Acorn) updates
DusanJovic-NOAA Aug 31, 2021
e4feeb2
ecFlow on Acorn
DusanJovic-NOAA Sep 3, 2021
edfa590
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 7, 2021
4eae303
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 13, 2021
53b200d
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 13, 2021
5ca74c3
Update PBS account and queue on Acorn
DusanJovic-NOAA Sep 13, 2021
1b1d4a5
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 14, 2021
fcd7172
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 15, 2021
2a66b3d
Set QUEUE to 'dev' on wcoss2
DusanJovic-NOAA Sep 15, 2021
daa9a1e
Update rt.conf (do not run regional_quilt_netcdf_parallel on Acorn)
DusanJovic-NOAA Sep 15, 2021
5b0a81e
Add RegressionTests_wcoss2.log
DusanJovic-NOAA Sep 16, 2021
47f2212
update FV3 and stochy physics branch
junwang-noaa Sep 21, 2021
57decff
Merge remote-tracking branch 'upstream/develop' into rstfix
junwang-noaa Sep 21, 2021
fa2d00e
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 22, 2021
71003ad
Merge branch 'ufs-community:develop' into acorn_rt
DusanJovic-NOAA Sep 23, 2021
bd57bbb
update fv3
junwang-noaa Sep 23, 2021
233ad70
sync with the top of develop branch
junwang-noaa Sep 23, 2021
d927b9a
Merge remote-tracking branch 'dusan/acorn_rt' into rstfix
junwang-noaa Sep 23, 2021
fcd9db2
udpate fv3 with output filename fix
junwang-noaa Sep 23, 2021
144a585
RT JOBS PASSED: hera.gnu. Log file uploaded.
BrianCurtis-NOAA Sep 23, 2021
32ad23b
add hera intel log file
BrianCurtis-NOAA Sep 23, 2021
77ef998
Merge branch 'rstfix' of https://github.com/junwang-noaa/ufs-weather-…
BrianCurtis-NOAA Sep 23, 2021
2cf24a7
RT JOBS PASSED: cheyenne.gnu. Log file uploaded.
BrianCurtis-NOAA Sep 23, 2021
cce0dfa
RT JOBS PASSED: cheyenne.intel. Log file uploaded.
BrianCurtis-NOAA Sep 23, 2021
8e06d41
RT JOBS PASSED: orion.intel. Log file uploaded.
BrianCurtis-NOAA Sep 23, 2021
5e30dfe
RT JOBS PASSED: gaea.intel. Log file uploaded.
BrianCurtis-NOAA Sep 23, 2021
ecd6a5b
RT JOBS PASSED: jet.intel. Log file uploaded.
BrianCurtis-NOAA Sep 23, 2021
b45ac59
add dell/cray log files
junwang-noaa Sep 24, 2021
0ffab30
update fv3 repo
junwang-noaa Sep 24, 2021
0c3b143
update to PSD stochastic physics master branch
junwang-noaa Sep 24, 2021
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2 changes: 1 addition & 1 deletion FV3
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Submodule FV3 updated 3 files
+1 −1 ccpp/physics
+94 −0 ccpp/suites/suite_FV3_GFS_v16_nsstNoahmpUGWPv1.xml
+1 −1 io/module_wrt_grid_comp.F90
1 change: 1 addition & 0 deletions cmake/configure_wcoss2.cmake
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
set(INLINE_POST ON CACHE BOOL "Enable inline post" FORCE)
set(PARALLEL_NETCDF ON CACHE BOOL "Enable parallel NetCDF" FORCE)
set(DEBUG_LINKMPI OFF CACHE BOOL "Enable linkmpi option when DEBUG mode is on" FORCE)
set(AVX2 OFF CACHE BOOL "Enable AVX2 instruction set" FORCE)
16 changes: 9 additions & 7 deletions modulefiles/ufs_wcoss2
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Expand Up @@ -6,16 +6,18 @@ proc ModulesHelp {} {

module-whatis "loads UFS Model prerequisites on Venus and Mars"

module unload cpe-cray cce
module load cpe-intel intel
module load PrgEnv-intel/8.1.0
module load intel/19.1.3.304
module load craype/2.7.8
module load cray-mpich/8.1.7

module load cmake/3.17.3
module load cmake/3.20.2

module use /lfs/h1/emc/nceplibs/noscrub/hpc-stack/test/noaa/modulefiles/stack
module use /lfs/h1/emc/nceplibs/noscrub/hpc-stack/libs/hpc-stack/modulefiles/stack

module load hpc/1.0.0-beta1
module load hpc-intel/19.1.1.217
module load hpc-cray-mpich/8.0.15
module load hpc/1.2.0
module load hpc-intel/19.1.3.304
module load hpc-cray-mpich/8.1.7

module load ufs_common

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16 changes: 9 additions & 7 deletions modulefiles/ufs_wcoss2_debug
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Expand Up @@ -6,16 +6,18 @@ proc ModulesHelp {} {

module-whatis "loads UFS Model prerequisites on Venus and Mars"

module unload cpe-cray cce
module load cpe-intel intel
module load PrgEnv-intel/8.1.0
module load intel/19.1.3.304
module load craype/2.7.8
module load cray-mpich/8.1.7

module load cmake/3.17.3
module load cmake/3.20.2

module use /lfs/h1/emc/nceplibs/noscrub/hpc-stack/test/noaa/modulefiles/stack
module use /lfs/h1/emc/nceplibs/noscrub/hpc-stack/libs/hpc-stack/modulefiles/stack

module load hpc/1.0.0-beta1
module load hpc-intel/19.1.1.217
module load hpc-cray-mpich/8.0.15
module load hpc/1.2.0
module load hpc-intel/19.1.3.304
module load hpc-cray-mpich/8.1.7

module load ufs_common_debug

Expand Down
2 changes: 1 addition & 1 deletion stochastic_physics
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Submodule stochastic_physics updated from 11dfba to 6c0c34
152 changes: 76 additions & 76 deletions tests/RegressionTests_cheyenne.gnu.log
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472 changes: 236 additions & 236 deletions tests/RegressionTests_cheyenne.intel.log
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470 changes: 235 additions & 235 deletions tests/RegressionTests_gaea.intel.log
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152 changes: 76 additions & 76 deletions tests/RegressionTests_hera.gnu.log
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607 changes: 310 additions & 297 deletions tests/RegressionTests_hera.intel.log
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462 changes: 231 additions & 231 deletions tests/RegressionTests_jet.intel.log
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472 changes: 236 additions & 236 deletions tests/RegressionTests_orion.intel.log
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2,720 changes: 2,720 additions & 0 deletions tests/RegressionTests_wcoss2.log
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268 changes: 134 additions & 134 deletions tests/RegressionTests_wcoss_cray.log
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482 changes: 241 additions & 241 deletions tests/RegressionTests_wcoss_dell_p3.log
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4 changes: 2 additions & 2 deletions tests/abort_dep_tasks.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
#!/usr/bin/env python
#!/usr/bin/env python3
from __future__ import print_function
import ecflow
import ecflow as ecflow
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Why is this required?

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I was getting some errors on Acorn, maybe something was wrong with ecflow installation. They keep changing things, I'll test again and remove it if it's not necessary anymore.

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Looks like they installed the latest version of ecflow the same day, or day before I made this change:

$ ls -dl /apps/ops/prod/nco/core/ecflow.v5.6.0.*
drwxr-xr-x 8 ops.prod prod 87 Apr 14 00:08 /apps/ops/prod/nco/core/ecflow.v5.6.0.3
drwxr-xr-x 8 ops.prod prod 87 Aug  5 16:15 /apps/ops/prod/nco/core/ecflow.v5.6.0.4
drwxr-xr-x 8 ops.prod prod 87 Aug 17 15:39 /apps/ops/prod/nco/core/ecflow.v5.6.0.5
drwxr-xr-x 8 ops.prod prod 87 Sep  2 19:58 /apps/ops/prod/nco/core/ecflow.v5.6.0.6

Who knows what the differences are between 5.6.0.5 and 5.6.0.6.

import re

# this script will work ONLY for standalone nmmb regression test ecflow workflow
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3 changes: 0 additions & 3 deletions tests/compile.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -59,9 +59,6 @@ set +x
if [[ $MACHINE_ID == macosx.* ]] || [[ $MACHINE_ID == linux.* ]]; then
source $PATHTR/modulefiles/ufs_${MACHINE_ID}
else
if [[ $MACHINE_ID == wcoss2 ]]; then
source /apps/prod/lmodules/startLmod
fi
# Activate lua environment for gaea
if [[ $MACHINE_ID == gaea.* ]] ; then
source /lustre/f2/pdata/esrl/gsd/contrib/lua-5.1.4.9/init/init_lmod.sh
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54 changes: 53 additions & 1 deletion tests/default_vars.sh
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Expand Up @@ -15,7 +15,7 @@ if [[ $MACHINE_ID = wcoss_cray ]]; then
TASKS_stretch=48 ; TPN_stretch=24 ; INPES_stretch=2 ; JNPES_stretch=4
TASKS_strnest=96 ; TPN_strnest=24 ; INPES_strnest=2 ; JNPES_strnest=4

elif [[ $MACHINE_ID = wcoss_dell_p3 || $MACHINE_ID = wcoss2 ]]; then
elif [[ $MACHINE_ID = wcoss_dell_p3 ]]; then

TASKS_dflt=150 ; TPN_dflt=28 ; INPES_dflt=3 ; JNPES_dflt=8
TASKS_thrd=78 ; TPN_thrd=14 ; INPES_thrd=3 ; JNPES_thrd=4
Expand Down Expand Up @@ -67,6 +67,58 @@ elif [[ $MACHINE_ID = wcoss_dell_p3 || $MACHINE_ID = wcoss2 ]]; then
MPB_cdeps_025="0 39"; APB_cdeps_025="0 39"
OPB_cdeps_025="40 159"; IPB_cdeps_025="160 207"

elif [[ $MACHINE_ID = wcoss2 ]]; then

TASKS_dflt=150 ; TPN_dflt=128 ; INPES_dflt=3 ; JNPES_dflt=8
TASKS_thrd=78 ; TPN_thrd=64 ; INPES_thrd=3 ; JNPES_thrd=4
TASKS_c384=336 ; TPN_c384=128 ; INPES_c384=8 ; JNPES_c384=6
TASKS_stretch=48 ; TPN_stretch=128 ; INPES_stretch=2 ; JNPES_stretch=4
TASKS_strnest=96 ; TPN_strnest=128 ; INPES_strnest=2 ; JNPES_strnest=4

TASKS_cpl_dflt=192; TPN_cpl_dflt=128; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
THRD_cpl_dflt=1; WPG_cpl_dflt=6; MPB_cpl_dflt="0 143"; APB_cpl_dflt="0 149"
OPB_cpl_dflt="150 179"; IPB_cpl_dflt="180 191"

TASKS_cpl_dflt_wwav=392; TPN_cpl_dflt_wwav=128; INPES_cpl_dflt_wwav=3; JNPES_cpl_dflt_wwav=8
THRD_cpl_dflt_wwav=1; WPG_cpl_dflt_wwav=6; MPB_cpl_dflt_wwav="0 143"; APB_cpl_dflt_wwav="0 149"
OPB_cpl_dflt_wwav="150 179"; IPB_cpl_dflt_wwav="180 191"; WPB_cpl_dflt_wwav="192 391"

TASKS_cpl_thrd=120; TPN_cpl_thrd=64; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
THRD_cpl_thrd=2; WPG_cpl_thrd=6; MPB_cpl_thrd="0 77"; APB_cpl_thrd="0 77"
OPB_cpl_thrd="78 107"; IPB_cpl_thrd="108 119"

TASKS_cpl_bmrk=480; TPN_cpl_bmrk=128; INPES_cpl_bmrk=6; JNPES_cpl_bmrk=8
THRD_cpl_bmrk=1; WPG_cpl_bmrk=24; MPB_cpl_bmrk="0 287"; APB_cpl_bmrk="0 311"
OPB_cpl_bmrk="312 431"; IPB_cpl_bmrk="432 479"

TASKS_cpl_wwav=560; TPN_cpl_wwav=128; INPES_cpl_wwav=6; JNPES_cpl_wwav=8
THRD_cpl_wwav=1; WPG_cpl_wwav=24; MPB_cpl_wwav="0 287"; APB_cpl_wwav="0 311"
OPB_cpl_wwav="312 431"; IPB_cpl_wwav="432 479"; WPB_cpl_wwav="480 559"

TASKS_cpl_c192=288; TPN_cpl_c192=128; INPES_cpl_c192=4; JNPES_cpl_c192=8
THRD_cpl_c192=1; WPG_cpl_c192=12; MPB_cpl_c192="0 191"; APB_cpl_c192="0 203"
OPB_cpl_c192="204 263"; IPB_cpl_c192="264 287"

TASKS_cpl_c384=318; TPN_cpl_c384=128; INPES_cpl_c384=3; JNPES_cpl_c384=8
THRD_cpl_c384=1; WPG_cpl_c384=6; MPB_cpl_c384="0 143"; APB_cpl_c384="0 149"
OPB_cpl_c384="150 269"; IPB_cpl_c384="270 317"

TASKS_datm_100=120; TPN_datm_100=128
MPB_datm_100="16 77"; APB_datm_100="0 15"
OPB_datm_100="78 107"; IPB_datm_100="108 119"

TASKS_datm_025=208; TPN_datm_025=128
MPB_datm_025="0 39"; APB_datm_025="0 39"
OPB_datm_025="40 159"; IPB_datm_025="160 207"

TASKS_cdeps_100=40; TPN_cdeps_100=128
MPB_cdeps_100="0 11"; APB_cdeps_100="0 11"
OPB_cdeps_100="12 27"; IPB_cdeps_100="28 39"

TASKS_cdeps_025=208; TPN_cdeps_025=128
MPB_cdeps_025="0 39"; APB_cdeps_025="0 39"
OPB_cdeps_025="40 159"; IPB_cdeps_025="160 207"

elif [[ $MACHINE_ID = orion.* ]]; then

TASKS_dflt=150 ; TPN_dflt=40 ; INPES_dflt=3 ; JNPES_dflt=8
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6 changes: 4 additions & 2 deletions tests/detect_machine.sh
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Expand Up @@ -27,8 +27,10 @@ case $(hostname -f) in
m72a2.ncep.noaa.gov) MACHINE_ID=wcoss_dell_p3 ;; ### mars
m72a3.ncep.noaa.gov) MACHINE_ID=wcoss_dell_p3 ;; ### mars

alogin01) MACHINE_ID=wcoss2 ;; ### acorn
alogin02) MACHINE_ID=wcoss2 ;; ### acorn
alogin01.acorn.wcoss2.ncep.noaa.gov) MACHINE_ID=wcoss2 ;; ### acorn
alogin02.acorn.wcoss2.ncep.noaa.gov) MACHINE_ID=wcoss2 ;; ### acorn
adecflow01.acorn.wcoss2.ncep.noaa.gov) MACHINE_ID=wcoss2 ;; ### acorn
adecflow02.acorn.wcoss2.ncep.noaa.gov) MACHINE_ID=wcoss2 ;; ### acorn

gaea9) MACHINE_ID=gaea ;; ### gaea9
gaea10) MACHINE_ID=gaea ;; ### gaea10
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3 changes: 1 addition & 2 deletions tests/fv3_conf/compile_qsub.IN_wcoss2
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Expand Up @@ -3,15 +3,14 @@
#PBS -o out
#PBS -e err
#PBS -N @[JBNME]
# #PBS -A @[ACCNR]
#PBS -A @[ACCNR]
#PBS -q @[QUEUE]
#PBS -l select=1:ncpus=8:mpiprocs=1
#PBS -l walltime=00:30:00

set -eux

cd $PBS_O_WORKDIR
export CRAY_CONFIG_DIR=$HOME

echo -n " $( date +%s )," > job_timestamp.txt
echo "Compile started: " `date`
Expand Down
9 changes: 4 additions & 5 deletions tests/fv3_conf/fv3_qsub.IN_wcoss2
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Expand Up @@ -3,7 +3,7 @@
#PBS -o out
#PBS -e err
#PBS -N @[JBNME]
# #PBS -A @[ACCNR]
#PBS -A @[ACCNR]
#PBS -q @[QUEUE]
#PBS -l place=vscatter,select=@[NODES]:ncpus=@[TPN]:mpiprocs=@[TPN]
#PBS -l walltime=00:@[WLCLK]:00
Expand All @@ -12,21 +12,20 @@ set -eux
echo -n " $( date +%s )," > job_timestamp.txt

cd $PBS_O_WORKDIR
export CRAY_CONFIG_DIR=$HOME

source /apps/prod/lmodules/startLmod
module use $( pwd -P )
module load modules.fv3
module load cray-pals
module list

echo "Model started: " `date`

export MPI_TYPE_DEPTH=20
export OMP_STACKSIZE=512M
export OMP_NUM_THREADS=@[THRD]
export OMP_PLACES=cores
export ESMF_RUNTIME_COMPLIANCECHECK=OFF:depth=4

cray aprun -n @[TASKS] ./fv3.exe
mpiexec -n @[TASKS] -ppn @[TPN] -depth @[THRD] ./fv3.exe

echo "Model ended: " `date`
echo -n " $( date +%s )," >> job_timestamp.txt
36 changes: 18 additions & 18 deletions tests/rt.conf
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Expand Up @@ -6,7 +6,7 @@ COMPILE | -DAPP=S2S -DCCPP_SUITES=FV3_GFS_2017_coupled,FV3_GFS_v16_coupled,FV3_G
RUN | cpld_control | - wcoss_cray | fv3 |
RUN | cpld_restart | - wcoss_cray | | cpld_control
RUN | cpld_2threads | - wcoss_cray | |
RUN | cpld_decomp | - wcoss_cray jet.intel | |
RUN | cpld_decomp | - wcoss_cray wcoss2 jet.intel | |
RUN | cpld_ca | - wcoss_cray | fv3 |

#12h/36h/48h restart tests
Expand All @@ -22,10 +22,10 @@ RUN | cpld_bmark_v16
RUN | cpld_restart_bmark_v16 | - wcoss_cray | | cpld_bmark_v16
RUN | cpld_bmark_v16_nsst | - wcoss_cray | fv3 |

COMPILE | -DAPP=S2SW -DCCPP_SUITES=FV3_GFS_2017_coupled,FV3_GFS_v16_coupled,FV3_GFS_v16_coupled_nsstNoahmpUGWPv1 | - wcoss_cray | fv3 |
RUN | cpld_bmark_wave_v16 | - wcoss_cray | fv3 |
RUN | cpld_bmark_wave_v16_p7b | - wcoss_cray cheyenne.intel | fv3 |
RUN | cpld_control_wave | - wcoss_cray | fv3 |
COMPILE | -DAPP=S2SW -DCCPP_SUITES=FV3_GFS_2017_coupled,FV3_GFS_v16_coupled,FV3_GFS_v16_coupled_nsstNoahmpUGWPv1 | - wcoss_cray wcoss2 | fv3 |
RUN | cpld_bmark_wave_v16 | - wcoss_cray wcoss2 | fv3 |
RUN | cpld_bmark_wave_v16_p7b | - wcoss_cray wcoss2 cheyenne.intel | fv3 |
RUN | cpld_control_wave | - wcoss_cray wcoss2 | fv3 |

COMPILE | -DAPP=S2S -DDEBUG=ON -DCCPP_SUITES=FV3_GFS_2017_coupled | - wcoss_cray | fv3 |
RUN | cpld_debug | - wcoss_cray | fv3 |
Expand All @@ -40,9 +40,9 @@ RUN | control
RUN | control_decomp | | |
RUN | control_2threads | - wcoss_cray | |
RUN | control_restart | | | control
RUN | control_fhzero | | |
RUN | control_fhzero | - wcoss2 | |
RUN | control_CubedSphereGrid | | fv3 |
RUN | control_wrtGauss_netcdf_parallel | | fv3 |
RUN | control_wrtGauss_netcdf_parallel | - wcoss2 | fv3 |
RUN | control_c48 | | fv3 |
RUN | control_c192 | | fv3 |
RUN | control_c384 | - wcoss_cray | fv3 |
Expand All @@ -60,7 +60,7 @@ RUN | regional_restart
RUN | regional_quilt | | fv3 |
RUN | regional_quilt_2threads | - wcoss_cray jet.intel | |
RUN | regional_quilt_hafs | | fv3 |
RUN | regional_quilt_netcdf_parallel | | fv3 |
RUN | regional_quilt_netcdf_parallel | - wcoss2 | fv3 |
RUN | regional_quilt_RRTMGP | | fv3 |

RUN | fv3_gsd | | fv3 |
Expand Down Expand Up @@ -144,14 +144,14 @@ RUN | fv3_esg_HAFS_v0_hwrf_thompson_debug
# HAFS tests #
###################################################################################################################################################################################

COMPILE | -DAPP=HAFS -DCCPP_SUITES=FV3_HAFS_v0_gfdlmp_tedmf,FV3_HAFS_v0_gfdlmp_tedmf_nonsst -D32BIT=ON | | fv3 |
RUN | hafs_regional_atm | | fv3 |
RUN | hafs_regional_atm_ocn | | fv3 |
COMPILE | -DAPP=HAFS -DCCPP_SUITES=FV3_HAFS_v0_gfdlmp_tedmf,FV3_HAFS_v0_gfdlmp_tedmf_nonsst -D32BIT=ON | - wcoss2 | fv3 |
RUN | hafs_regional_atm | - wcoss2 | fv3 |
RUN | hafs_regional_atm_ocn | - wcoss2 | fv3 |

COMPILE | -DAPP=HAFS-ALL -DCCPP_SUITES=FV3_HAFS_v0_gfdlmp_tedmf,FV3_HAFS_v0_gfdlmp_tedmf_nonsst -D32BIT=ON | - wcoss_cray | fv3 |
RUN | hafs_regional_docn | - wcoss_cray | fv3 |
RUN | hafs_regional_docn_oisst | - wcoss_cray | fv3 |
RUN | hafs_regional_datm_cdeps | - wcoss_cray | fv3 |
COMPILE | -DAPP=HAFS-ALL -DCCPP_SUITES=FV3_HAFS_v0_gfdlmp_tedmf,FV3_HAFS_v0_gfdlmp_tedmf_nonsst -D32BIT=ON | - wcoss_cray wcoss2 | fv3 |
RUN | hafs_regional_docn | - wcoss_cray wcoss2 | fv3 |
RUN | hafs_regional_docn_oisst | - wcoss_cray wcoss2 | fv3 |
RUN | hafs_regional_datm_cdeps | - wcoss_cray wcoss2 | fv3 |

###################################################################################################################################################################################
# NEMS Data Atmosphere tests #
Expand Down Expand Up @@ -196,9 +196,9 @@ RUN | datm_cdeps_debug_cfsr
# ATM-WAV tests #
###################################################################################################################################################################################

COMPILE | -DAPP=ATMW -DCCPP_SUITES=FV3_GFS_v16 -D32BIT=ON | - wcoss_cray | fv3 |
RUN | control_atmwav | - wcoss_cray | fv3 |
RUN | control_c384gdas_wav | - wcoss_cray jet.intel cheyenne.intel | fv3 |
COMPILE | -DAPP=ATMW -DCCPP_SUITES=FV3_GFS_v16 -D32BIT=ON | - wcoss_cray wcoss2 | fv3 |
RUN | control_atmwav | - wcoss_cray wcoss2 | fv3 |
RUN | control_c384gdas_wav | - wcoss_cray jet.intel cheyenne.intel wcoss2 | fv3 |

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# ATM-GOCART tests #
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