Merge branch 'guix-dev' into 'master'

[guix] Dev setup

See merge request ogs/ogs!4685

.guix-channel

@@ -0,0 +1,5 @@
+;; This file lets us present this repo as a Guix channel.
+
+(channel
+ (version 0)
+ (directory ".guix/modules")) ;look for package modules under .guix/modules/

.guix/modules/ogs-package.scm

@@ -0,0 +1,218 @@
+;; This file defines a Guix package. It can be used to spawn an
+;; interactive development environment:
+;;
+;; guix shell
+;;
+;; Or it can be used to build Guile from a checkout in an isolated
+;; environment:
+;;
+;; guix build -f guix.scm
+;;
+;; Likewise, you may cross-compile it:
+;;
+;; guix build -f guix.scm --target=x86_64-w64-mingw32
+;;
+;; Or may want to build a variant:
+;; guix build -L $PWD/.guix/modules ogs-petsc-ssd
+
+(define-module (ogs-package)
+ #:use-module (guix)
+ #:use-module (guix packages)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages certs) ; TODO: cpm
+ #:use-module (gnu packages cmake)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages cpp)
+ #:use-module (gnu packages image-processing)
+ #:use-module (gnu packages logging)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages mpi)
+ #:use-module (gnu packages ninja)
+ #:use-module (gnu packages pretty-print)
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages version-control)
+ #:use-module (gnu packages xml)
+ )
+
+(define vcs-file?
+ ;; Return true if the given file is under version control.
+ (or (git-predicate "../..") ; (current-source-directory)
+ (const #t))) ;not in a Git checkout
+
+(define-public ogs
+ (package
+ (name "ogs")
+ (version "6.4.99-git")
+ (source (local-file "../.." "ogs-checkout"
+ #:recursive? #t
+ #:select? vcs-file?
+ ))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:build-type "Release"
+ #:configure-flags (list
+ ; passing variables works like this
+ ; ,(string-append "-DOGS_VERSION=" version)
+ ; TODO: but it is not overwritten in sub-packages...
+ "-DGUIX_BUILD=ON"
+ "-DOGS_BUILD_TESTING=OFF"
+ "-DOGS_USE_EIGEN_UNSUPPORTED=OFF" ; Eigen 3.4.0
+ "-DOGS_INSTALL_DEPENDENCIES=OFF" ; handled by guix
+ "-DOGS_CPU_ARCHITECTURE=OFF" ; enable guix --tune
+ )
+ #:cmake ,cmake)) ;for newer CMake version
+ (inputs (list boost
+ eigen
+ fmt
+ googletest
+ hdf5
+ json-modern-cxx
+ libxml2
+ pybind11-2.10.4
+ python
+ range-v3
+ spdlog
+ zlib
+ vtk))
+ (native-inputs (list git ninja googletest nss-certs)) ; TODO: cpm
+ (synopsis "OpenGeoSys")
+ (description
+ "Simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media")
+ (home-page "https://www.opengeosys.org")
+ (properties '((tunable? . #t)))
+ (license license:bsd-3)))
+
+(define-public ogs-ssd
+ (package
+ (inherit ogs)
+ (name "ogs-ssd")
+ (arguments
+ (substitute-keyword-arguments (package-arguments ogs)
+ ((#:configure-flags flags)
+ `(cons* "-DOGS_BUILD_PROCESSES=SteadyStateDiffusion"
+ ,flags))))
+ (synopsis "OGS with SteadyStateDiffusion only (for faster build testing)")))
+
+(define-public ogs-petsc
+ (package
+ (inherit ogs)
+ (name "ogs-petsc")
+ (inputs (modify-inputs (package-inputs ogs)
+ (prepend openmpi petsc-openmpi)
+ (replace "vtk" vtk-openmpi)
+ (replace "hdf5" hdf5-parallel-openmpi)))
+ (arguments
+ (substitute-keyword-arguments (package-arguments ogs)
+ ((#:configure-flags flags)
+ `(cons* "-DOGS_USE_PETSC=ON"
+ "-DCMAKE_C_COMPILER=mpicc"
+ "-DCMAKE_CXX_COMPILER=mpic++"
+ ,flags))))
+ (synopsis "OGS with PETSc")))
+
+(define-public ogs-petsc-ssd
+ (package
+ (inherit ogs-petsc)
+ (name "ogs-petsc-ssd")
+ (arguments
+ (substitute-keyword-arguments (package-arguments ogs-petsc)
+ ((#:configure-flags flags)
+ `(cons* "-DOGS_BUILD_PROCESSES=SteadyStateDiffusion"
+ ,flags))))
+ (synopsis "OGS with PETSc and SteadyStateDiffusion only (for faster build testing)")))
+
+; #### Releases ####
+(define-public ogs-6.4.4
+ (package
+ (inherit ogs)
+ (name "ogs")
+ (version "6.4.4")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.opengeosys.org/ogs/ogs.git")
+ (commit "d4ca7e627f2fc012bfe434649b797e78e5c2a8f1")
+ (recursive? #t)))
+ (file-name (git-file-name name version))
+ (sha256
+ ;; Update with `guix hash -rx .`, make sure to have submodules updated!
+ (base32
+ "1f6mcbjx76irf1g0xkh6hgpv4qn2swbiyvlazvlrhjfyxb9bckq9"))))
+ (synopsis "OGS 6.4.4 release")))
+
+(define-public ogs-petsc-6.4.4
+ (package
+ (inherit ogs-petsc)
+ (name "ogs-petsc")
+ (version "6.4.4")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.opengeosys.org/ogs/ogs.git")
+ (commit "d4ca7e627f2fc012bfe434649b797e78e5c2a8f1")
+ (recursive? #t)))
+ (file-name (git-file-name name version))
+ (sha256
+ ;; Update with `guix hash -rx .`, make sure to have submodules updated!
+ (base32
+ "1f6mcbjx76irf1g0xkh6hgpv4qn2swbiyvlazvlrhjfyxb9bckq9"))))
+ (synopsis "OGS 6.4.4 with PETSc release")))
+
+; #### Dependencies ####
+(define-public vtk-openmpi
+ (package
+ (inherit vtk)
+ (name "vtk-openmpi")
+ (inputs (modify-inputs (package-inputs vtk)
+ (prepend hdf5-parallel-openmpi openmpi)))
+ (arguments
+ (substitute-keyword-arguments (package-arguments vtk)
+ ((#:configure-flags flags)
+ `(cons* "-DVTK_MODULE_ENABLE_VTK_IOParallelXML=YES"
+ "-DVTK_MODULE_ENABLE_VTK_ParallelMPI=YES" "-DVTK_USE_MPI=ON"
+ ,flags))))
+ (synopsis "VTK with OpenMPI support")))
+
+(define pybind11-2.10.4
+ (package
+ (inherit pybind11)
+ (version "2.10.4")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pybind/pybind11")
+ (commit (string-append "v" version))))
+ (sha256
+ (base32
+ "0rbcfvl7y472sykzdq3vrkw83kar0lpzhk3wq9yj9cdydl8cpfcz"))))))
+;; return package
+ogs
+
+;; TODO: add this to web page
+; ## Using the ogs repo as a Guix channel (as a user of ogs)
+;
+; Add the following to `~/.config/guix/channels.scm`:
+;
+; ```scheme
+; (append (list (channel
+; (name 'ogs)
+; (url "https://gitlab.opengeosys.org/ogs/ogs.git")
+; (branch "master"))) %default-channels)
+; ```
+;
+; Run `guix pull`.
+;
+; Then you can install the ogs package:
+;
+; ```bash
+; guix install ogs@6.4.4
+; # OR, e.g.
+; guix install ogs-petsc@6.4.4
+; ```

CMakePresets.json

@@ -9,7 +9,7 @@
  {
  "name": "_binary_dir",
  "hidden": true,
- "binaryDir": "${sourceParentDir}/build/${presetName}"
+ "binaryDir": "${sourceParentDir}/build/$penv{CMAKE_PRESET_BUILD_DIR_PREFIX}${presetName}"
  },
  {
  "name": "_release",

guix.scm

@@ -0,0 +1 @@
+.guix/modules/ogs-package.scm

scripts/ci/jobs/build-guix.yml

@@ -10,4 +10,5 @@ build guix:
  - when: manual
  allow_failure: true
  script:
- - guix time-machine --channels=scripts/guix/channels.scm -- build ogs-ssd ogs-petsc-ssd --with-source=ogs-ssd@6.4.4=$PWD --with-source=ogs-petsc-ssd@6.4.4=$PWD
+ - guix time-machine --commit=v1.4.0 -- build -L $PWD/.guix/modules ogs-ssd
+ - guix time-machine --commit=v1.4.0 -- build -L $PWD/.guix/modules ogs-petsc-ssd