fixing naming and updating readme

uhlmanngroup · Aug 26, 2023 · 0b39143 · 0b39143
1 parent 4f6461d
commit 0b39143
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Showing 2 changed files with 16 additions and 14 deletions.
diff --git a/README.md b/README.md
@@ -16,27 +16,28 @@ bioimage_embed includes functions for loading and preprocessing images from micr
 
 ## Usage
 
-### Get data
-
- make download.data
-
-### Intall
-
- poetry install
-
-and or:
+### Install:
 
  pip install -e .
 
-### Run
+### CLI
 
  bioimage_embed --help
 
  or
 
  bie --help
+### Get data
+
+ make download.data
+
+### Dev intall
+
+Uses poetry to manage dependencies and virtualenvs
+
+ poetry env use python 
+
+ poetry install
 
-### TODO
+ poetry shell
 
-- Scale invariant distance matrix encoding (scale by matrix norm)
-- Find better sampling of contour, e.g. using Delaunay triangulation?
diff --git a/pyproject.toml b/pyproject.toml
@@ -5,7 +5,8 @@ description = ""
 authors = ["Craig <ctr26@ebi.ac.uk>"]
 
 [tool.poetry.scripts]
-bioimrep = "main:main"
+bioimage_emebed = "main:main"
+bie = "main:main"
 
 [tool.poetry.dependencies]
 python = "^3.9"