Merge branch 'dev'

ukhsa-collaboration · Aug 19, 2024 · f97ffdb · f97ffdb
2 parents 3456e45 + d6960c9
commit f97ffdb
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Showing 6 changed files with 15 additions and 3 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -10,8 +10,6 @@
 
 * Implemented new steps for record matching, including first/last name field swaps.
 
-* Added new id_test sample data.
-
 * Add fuzzy match functionality to patient_id
 
 * Add new package dataset "lab_data" for testing functions

diff --git a/R/lab_data.R b/R/lab_data.R
@@ -24,6 +24,7 @@
 #'   \item{lab_code}{Laboratory codes (Factor with unique levels).}
 #'   \item{local_authority_name}{Name of the local authority.}
 #'   \item{local_authority_code}{Code of the local authority.}
+#'   \item{postcode}{Postcode}
 #' }
 #'
 #' @examples

diff --git a/R/patient_id.R b/R/patient_id.R
@@ -71,14 +71,15 @@
 #'
 #' @examples
 #' uk_patient_id(
-#'  data = head(epidm::lab_data,1000),
+#'  data = head(epidm::lab_data),
 #'  id = list(
 #'    nhs_number = 'nhs_number',
 #'    hospital_number = 'local_patient_identifier',
 #'    date_of_birth = 'patient_birth_date',
 #'    sex_mfu = 'sex',
 #'    forename = 'forename',
 #'    surname = 'surname'
+#'    postcode = 'postcode'
 #'  ),
 #'  .sortOrder = 'specimen_date',
 #'  .forceCopy = TRUE

diff --git a/data/lab_data.rda b/data/lab_data.rda
diff --git a/man/lab_data.Rd b/man/lab_data.Rd
diff --git a/synth_pii_small.csv b/synth_pii_small.csv
@@ -0,0 +1,11 @@
+nhs_number,local_patient_identifier,patient_birth_date,sex,surname,forename,organism_species_name,specimen_date,specimen_type,lab_code,local_authority_name,local_authority_code,postcode
+576322970,IG12067,05/10/1938,Female,WILLIAMS,JAMILETH,KLEBSIELLA PNEUMONIAE,24/05/2020,BLOOD,BI20985,Worthing,E07000229,BN14 9EP
+325999719,XB29898,04/04/1957,Male,EL-SHAHEED,ZAAHIR,KLEBSIELLA PNEUMONIAE,08/07/2023,BLOOD,JH70033,Reading,E06000038,RG1 7QE
+705649596,KR2535,24/06/1927,Male,LINTON,KASHIEF,STAPHYLOCOCCUS AUREUS,24/02/2023,BLOOD,CU5997,Plymouth,E06000026,PL7 1LU
+115685428,HS45202,14/06/1962,Male,RODA,TYLER,STAPHYLOCOCCUS AUREUS,26/08/2023,BLOOD,ES3851,Cheshire West and Chester,E06000050,CW6 9TX
+705649596,KR2535,24/06/1927,Male,LINTON,KASHIEF,STAPHYLOCOCCUS AUREUS,24/02/2023,BLOOD,CU5997,Plymouth,E06000026,PL7 1LU
+115685428,HS45202,14/06/1962,Male,RODA,TYLER,STAPHYLOCOCCUS AUREUS,26/08/2023,BLOOD,ES3851,Cheshire West and Chester,E06000050,CW6 9TX
+115685428,HS45202,14/06/1962,Male,RODA,TYLER,STAPHYLOCOCCUS AUREUS,27/08/2023,BLOOD,ES3851,Cheshire West and Chester,E06000050,CW6 9TX
+705649596,KR2535,24/06/1927,Male,LINTON,KASHIEF,STAPHYLOCOCCUS AUREUS,25/02/2023,BLOOD,CU5997,Plymouth,E06000026,PL7 1LU
+111,HS45202,14/06/1962,Male,RODA,TILER,STAPHYLOCOCCUS AUREUS,28/08/2023,BLOOD,ES3851,Cheshire West and Chester,E06000050,CW6 9TX
+,,,,,,,,,,,,