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Observational study of central venous catheter-related thrombosis

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Observational study of central venous catheter-related thrombosis (CRT)

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.

We use guix to ensure an reproducible computing environment.

Bootstrap

Guix on debian

sudo apt install make git guix

Fetch sources

git clone git@github.com:umg-minai/crt.git

Build manuscript

Running make the first time will take some time because guix hast to download the given state and build the image.

make

Modify the manuscript

All the work has to be done in the sections/*.Rmd files.

Make targets

  • make or make manuscript produces an .html file in output/.
  • make dist produces a .docx in distribute/ which could be send to the co-authors.
  • make clean removes all generated files.
  • make env runs a shell in the guix generated environment.

Update data

If the raw data changed, you have to call make regenerate-data manually (The data file doesn't depend on the raw data to avoid errors if others who don't own the raw data checkout the repository.)

Contact/Contribution

You are welcome to:

We try to follow: