Adding nutrients components #14 #26

	name: Advanced tests

	on:
	pull_request:
	types: [ready_for_review, opened]
	branches: [main]

	jobs:

	run-basic-tests:

	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
	fail-fast: false

	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -l {0}

	steps:

	# check out PR HEAD commit
	- name: check out PR HEAD commit
	uses: actions/checkout@v2
	with:
	ref: ${{ github.event.pull_request.head.sha }}

	# set up a conda environment
	- name: set up miniconda environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: testing-env
	python-version: ${{ matrix.python-version }}
	auto-update-conda: true
	mamba-version: "*"
	channels: conda-forge
	channel-priority: true

	# install dependencies on conda environment
	- name: install package dependencies
	run: \|
	mamba install udunits2=2.2.25
	mamba install --file=requirements.txt
	mamba install --file=requirements-tests.txt

	# build dummy components required for tests
	- name: make gfortran available (macos only)
	if: matrix.os == 'macos-latest'
	run: \|
	sudo ln -s /usr/local/bin/gfortran-10 /usr/local/bin/gfortran
	sudo mkdir /usr/local/gfortran
	sudo ln -s /usr/local/Cellar/gcc@10/*/lib/gcc/10 /usr/local/gfortran/lib

	- name: build dummy C and Fortran components
	run: \|
	(cd ./tests/tests/components && make)

	# install package
	- name: install package
	run: \|
	pip install -e .

	# run tests
	- name: run advanced test suite
	run: \|
	(cd ./tests && python run_all_tests.py)

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