Use history mailer ansible role

dev_playbook.yml

@@ -11,6 +11,7 @@
     - secret_group_vars/stats_server_vault
     - secret_group_vars/dev_secrets
     - secret_group_vars/sentry_vault
+    - secret_group_vars/history_mailer_vault
   pre_tasks:
     - name: Attach volume to instance
       include_role:
@@ -44,68 +45,69 @@
         enabled: false
         state: stopped
   roles:
-    - galaxyproject.repos
-    - common
-    - mounts
-    - install-tpv
-    - geerlingguy.pip
-    - gantsign.golang
-    - cyverse-ansible.singularity
-    - galaxyproject.galaxy
-    - role: galaxyproject.miniconda
-      become: true
-      become_user: galaxy
-    - usegalaxy_eu.galaxy_subdomains
-    - webhooks
-    - nginx-upload-module
-    - galaxyproject.nginx
-    - galaxyproject.tusd
-    - geerlingguy.nfs
-    - galaxyproject.slurm
-    # - galaxyproject.s3fs
-    - galaxyproject.cvmfs
-    - galaxyproject.gxadmin
-    - pg-post-tasks
-    - remote-pulsar-cron
-    - galaxy-pg-cleanup
-    #- galaxyproject.tiaas2 # broken in galaxy release_23.1 - missing static/style/base.css
-    - geerlingguy.docker
-    - dj-wasabi.telegraf
-    - postfix-mail-relay
-    #- login-override
-    - acl-on-startup
-  post_tasks:
-    - name: Ensure object store paths exist
-      file:
-        state: directory
-        path: "{{ item }}"
-        owner: galaxy
-        group: galaxy
-      with_items:
-        - /mnt/galaxy/data
-        - /mnt/galaxy/data-2
-        - /mnt/galaxy/data-3
-    - name: Make local_tool directory group-writable by machine users
-      file:
-        path: /mnt/galaxy/local_tools
-        owner: root
-        group: devs
-        mode: 0775
-        state: directory
-    - name: Install slurm-drmaa
-      package:
-        name: slurm-drmaa1
-    - name: Uninstall the existing web-dav-client
-      pip:
-        name: "webdavclient3"
-        virtualenv: "{{ galaxy_venv_dir }}"
-        state: absent
-    - name: Workaround content-length header bug in webdav through forcible update to newer version
-      pip:
-        name: "webdavclient3@git+https://github.com/ezhov-evgeny/webdav-client-python-3@0f17fa7946e66f7963db367d0d6b2e7f940ebeb8"
-        virtualenv: "{{ galaxy_venv_dir }}"
-    - name: Reload exportfs
-      command: exportfs -ra
-      become: yes
-      become_user: root
+    # - galaxyproject.repos
+    # - common
+    # - mounts
+    # - install-tpv
+    # - geerlingguy.pip
+    # - gantsign.golang
+    # - cyverse-ansible.singularity
+    # - galaxyproject.galaxy
+    # - role: galaxyproject.miniconda
+    #   become: true
+    #   become_user: galaxy
+    # - usegalaxy_eu.galaxy_subdomains
+    # - webhooks
+    # - nginx-upload-module
+    # - galaxyproject.nginx
+    # - galaxyproject.tusd
+    # - geerlingguy.nfs
+    # - galaxyproject.slurm
+    # # - galaxyproject.s3fs
+    # - galaxyproject.cvmfs
+    # - galaxyproject.gxadmin
+    # - pg-post-tasks
+    # - remote-pulsar-cron
+    # - galaxy-pg-cleanup
+    # #- galaxyproject.tiaas2 # broken in galaxy release_23.1 - missing static/style/base.css
+    # - geerlingguy.docker
+    # - dj-wasabi.telegraf
+    # - postfix-mail-relay
+    # #- login-override
+    # - acl-on-startup
+    - usegalaxy-au.history_mailer
+  # post_tasks:
+  #   - name: Ensure object store paths exist
+  #     file:
+  #       state: directory
+  #       path: "{{ item }}"
+  #       owner: galaxy
+  #       group: galaxy
+  #     with_items:
+  #       - /mnt/galaxy/data
+  #       - /mnt/galaxy/data-2
+  #       - /mnt/galaxy/data-3
+  #   - name: Make local_tool directory group-writable by machine users
+  #     file:
+  #       path: /mnt/galaxy/local_tools
+  #       owner: root
+  #       group: devs
+  #       mode: 0775
+  #       state: directory
+  #   - name: Install slurm-drmaa
+  #     package:
+  #       name: slurm-drmaa1
+  #   - name: Uninstall the existing web-dav-client
+  #     pip:
+  #       name: "webdavclient3"
+  #       virtualenv: "{{ galaxy_venv_dir }}"
+  #       state: absent
+  #   - name: Workaround content-length header bug in webdav through forcible update to newer version
+  #     pip:
+  #       name: "webdavclient3@git+https://github.com/ezhov-evgeny/webdav-client-python-3@0f17fa7946e66f7963db367d0d6b2e7f940ebeb8"
+  #       virtualenv: "{{ galaxy_venv_dir }}"
+  #   - name: Reload exportfs
+  #     command: exportfs -ra
+  #     become: yes
+  #     become_user: root
 

galaxy-backup_playbook.yml

@@ -6,6 +6,7 @@
       - group_vars/VAULT
       - host_vars/galaxy-backup.yml
       - secret_group_vars/stats_server_vault
+      - secret_group_vars/history_mailer_vault
       - secret_group_vars/ubuntu_maintenance_key
   pre_tasks:
     - name: Attach volume to instance
@@ -18,6 +19,7 @@
     - common
     - geerlingguy.pip
     - slg.db-backup
+    - usegalaxy-au.history_mailer
     - dj-wasabi.telegraf
   post_tasks:
     - name: Ensure desired version of ansible is installed

galaxy-db_playbook.yml

@@ -7,6 +7,7 @@
       - group_vars/dbservers.yml
       - host_vars/galaxy-db.usegalaxy.org.au.yml
       - secret_group_vars/stats_server_vault
+      - secret_group_vars/history_mailer_vault
       - secret_group_vars/ubuntu_maintenance_key
   pre_tasks:
       - name: Attach volume to instance

group_vars/all.yml

@@ -158,6 +158,8 @@ common_packages:
     - fail2ban
     - software-properties-common
     - pigz
+    - sqlite3
+    - iotop
 
 #Set pip to be pip3 by default - see roles/geerlingguy.pip/defaults/main.yml
 pip_package: python3-pip

host_vars/dev.gvl.org.au.yml

@@ -416,3 +416,61 @@ webhook_plugins:
   - demo
   - gtn
   - news
+
+### History mailer
+
+# config
+history_mailer_warn_days: 365
+history_mailer_delete_days: 379
+history_mailer_email_days_threshold: 14
+history_mailer_purge_days_threshold: 6
+
+history_mailer_galaxy_url: https://dev.gvl.org.au
+history_mailer_galaxy_api_key: "{{ vault_jenkins_bot_dev_api_key }}"  # TODO: add this!
+
+history_mailer_galaxy_keeplist_group: "History Retention Keeplist"
+
+# history_mailer_postal_base_url: "https://mail.usegalaxy.org.au/api/v1/"
+# history_mailer_postal_api_key: "{{ vault_history_mailer_postal_api_key }}"
+
+# history_mailer_email_template_warning: "{{ history_mailer_email_template_dir }}/email_warning.html"
+# history_mailer_email_template_deletion: "{{ history_mailer_email_template_dir }}/email_deletion.html"
+
+# history_mailer_mail_from: "Galaxy Australia <no-reply@usegalaxy.org.au>"
+# history_mailer_mail_replyto: "help@genome.edu.au"
+
+# history_mailer_slack_token: "{{ vault_history_mailer_slack_token }}"
+# history_mailer_slack_alert_channel: "#alerts"
+# history_mailer_slack_log_channel: "#galaxy-logs"
+# history_mailer_alert_mentions: "<@Catherine>"
+# history_mailer_log_mentions: "<@Catherine>"
+
+# settings for ansible role
+history_mailer_user: ubuntu
+history_mailer_dir: "/home/{{ history_mailer_user }}/hm_TEST"
+
+# history_mailer_use_postal: true # Must be true for history mailer to work
+
+history_mailer_enable_cron_jobs: false # When not enabled, cron jobs will be entered in crontab in a disabled state
+
+history_mailer_cron_jobs:
+- name: warn_and_delete
+  weekday: "3"
+  hour: "11"
+  options:
+    - production
+    - warn
+    - dryrun
+# - name: purge_histories
+#   weekday: "2"
+#   hour: "12"
+#   options:
+#     - production
+#     - purge
+#     - notify
+
+# Delete these and use vault variables
+vault_history_mailer_postal_api_key: nottherealkey #
+vault_history_mailer_slack_token: "xoxb"
+vault_jenkins_bot_production_api_key: abcdefg # TODO: add the real one, add these to vault
+vault_jenkins_bot_staging_api_key: xyz # TODO: add the real one, add these to vault

host_vars/galaxy-backup.yml

@@ -49,3 +49,70 @@ extra_keys:
 ssh_config_id_file: "/home/{{ ssh_config_user }}/.ssh/internal_hop_key"
 ssh_config_user: ubuntu
 ssh_config_hosts: "{{ groups['galaxy_group'] }}"
+
+### History mailer
+
+# config
+history_mailer_warn_days: 365
+history_mailer_delete_days: 379
+history_mailer_email_days_threshold: 14
+history_mailer_purge_days_threshold: 6
+
+history_mailer_galaxy_url: https://usegalaxy.org.au
+history_mailer_galaxy_api_key: "{{ vault_jenkins_bot_production_api_key }}"  # TODO: add this!
+history_mailer_staging_galaxy_url: https://staging.gvl.org.au
+history_mailer_staging_galaxy_api_key: "{{ vault_jenkins_bot_staging_api_key }}"  # TODO: add this!
+
+history_mailer_galaxy_keeplist_group: "History Retention Keeplist"
+
+history_mailer_postal_base_url: "https://mail.usegalaxy.org.au/api/v1/"
+history_mailer_postal_api_key: "{{ vault_history_mailer_postal_api_key }}"
+
+history_mailer_email_template_warning: "{{ history_mailer_email_template_dir }}/email_warning.html"
+history_mailer_email_template_deletion: "{{ history_mailer_email_template_dir }}/email_deletion.html"
+
+history_mailer_mail_from: "Galaxy Australia <no-reply@usegalaxy.org.au>"
+history_mailer_mail_replyto: "help@genome.edu.au"
+
+history_mailer_slack_token: "{{ vault_history_mailer_slack_token }}"
+history_mailer_slack_alert_channel: "#alerts"
+history_mailer_slack_log_channel: "#galaxy-logs"
+history_mailer_alert_mentions: "<@Catherine>"
+history_mailer_log_mentions: "<@Catherine>"
+
+# settings for ansible role
+history_mailer_user: ubuntu
+history_mailer_dir: "/home/{{ history_mailer_user }}/hm_TEST"
+
+history_mailer_use_postal: true # Must be true for history mailer to work
+
+history_mailer_enable_cron_jobs: false # When not enabled, cron jobs will be entered in crontab in a disabled state
+
+history_mailer_files:
+  - src: templates/history_mailer/email_warning.html
+    dest: "{{ history_mailer_email_template_warning }}"
+  - src: templates/history_mailer/email_deletion.html
+    dest: "{{ history_mailer_email_template_deletion }}"
+
+history_mailer_cron_jobs:
+- name: warn_and_delete
+  weekday: "3"
+  hour: "11"
+  options:
+    - production
+    - warn
+    - delete
+    - notify
+- name: purge_histories
+  weekday: "2"
+  hour: "12"
+  options:
+    - production
+    - purge
+    - notify
+
+# Delete these and use vault variables
+vault_history_mailer_postal_api_key: nottherealkey # ##
+vault_history_mailer_slack_token: "xoxb"
+vault_jenkins_bot_production_api_key: abcdefg # TODO: add the real one, add these to vault
+vault_jenkins_bot_staging_api_key: xyz # TODO: add the real one, add these to vault

requirements.yml

@@ -79,3 +79,7 @@ roles:
 - name: geerlingguy.redis
   version: 1.8.0
 
+- name: usegalaxy-au.history_mailer
+  src: https://github.com/usegalaxy-au/ansible-history-mailer
+  version: d6a5120 # TODO: at the very least add a commit ID here
+

scripts/update_roles.py

@@ -30,30 +30,31 @@
     role_requirements = yaml.safe_load(handle).get('roles')
 
 for r in role_requirements:
-    try:
         name = r.get('name', r.get('src'))
         if not name:
             raise Exception(f'Could not find role {name} in yaml entry')
         required_version = r.get('version')
         if not required_version:
             print(f'role {name} has no required version, no need to update')
             continue
+
         role_info_file = os.path.join(here, roles_dir, name, 'meta', '.galaxy_install_info')
-        role_info_version = None
-        with open(role_info_file) as handle:
-            role_info_lines = handle.readlines()
-        for line in role_info_lines:
-            content = re.split(':\s+', line.strip())
-            if content[0] == 'version':
-                role_info_version = content[1]
-        if role_info_version and role_info_version == required_version:
-            print(f'role {name} is already installed at version {role_info_version}, no need to update')
-        else:
-            print(f'role {name} will be updated from {role_info_version} to {required_version}')
+        if not os.path.exists(role_info_file):
+            print(f'role {name} has no .galaxy_install_info, assuming new and adding to roles to install')
             roles_to_update.append(r)
-    except Exception as e: # file doesnt exist or isn't parsed properly or something
-        sys.stderr.write(str(e))
-        roles_to_update.append(r)
+        else:
+            role_info_version = None
+            with open(role_info_file) as handle:
+                role_info_lines = handle.readlines()
+            for line in role_info_lines:
+                content = re.split(':\s+', line.strip())
+                if content[0] == 'version':
+                    role_info_version = content[1]
+            if role_info_version and role_info_version == required_version:
+                print(f'role {name} is already installed at version {role_info_version}, no need to update')
+            else:
+                print(f'role {name} will be updated from {role_info_version} to {required_version}')
+                roles_to_update.append(r)
 if roles_to_update:
     with open(output_file, 'w') as handle:
         yaml.safe_dump(roles_to_update, handle)

secret_group_vars/history_mailer_vault

@@ -0,0 +1,23 @@
+$ANSIBLE_VAULT;1.1;AES256
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