Jenkins update build 222.

usegalaxy-au · Dec 4, 2024 · e4004c9 · e4004c9
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -8148,3 +8148,8 @@ Update	221	27/11/24 02:31:03	krakentools_extract_kraken_reads	False	Installed	iu
 Update	221	27/11/24 02:35:46	krakentools_kreport2krona	False	Installed	iuc	02bbace216f2	02bbace216f2		2/2		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
 Update	221	27/11/24 02:41:27	krakentools_kreport2mpa	False	Installed	iuc	d33cf727ed94	d33cf727ed94		3/3		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
 Update	221	27/11/24 03:00:28	quast	False	Tests failed	iuc	a3b35edea53a	a3b35edea53a	Staging Testing	11/13		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_221/install_log.txt
+Update	222	04/12/24 01:32:54	infernal	False	Tests failed	bgruening	3711f654044e	3711f654044e	Staging Testing	7/12		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_222/install_log.txt
+Update	222	04/12/24 01:38:59	krakentools_alpha_diversity	False	Tests failed	iuc	78b69342c280	78b69342c280	Staging Testing	3/5		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_222/install_log.txt
+Update	222	04/12/24 01:39:44	phyloseq_from_dada2	False	Installed	iuc	40ebae5bbe51	40ebae5bbe51				Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_222/install_log.txt
+Update	222	04/12/24 01:53:31	quast	False	Tests failed	iuc	a3b35edea53a	a3b35edea53a	Staging Testing	11/13		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_222/install_log.txt
+Update	222	04/12/24 02:16:45	ucsc_fatovcf	False	Installed	iuc	a40dd4fd3096	a40dd4fd3096		2/2		Convert Formats	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_222/install_log.txt
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 3f3e247c053d
-  - 6e9aea89e388
   - 4efdca267d51
-  - c2ef298da409
   - 78c75f134c16
+  - 3f3e247c053d
+  - c2ef298da409
+  - 6e9aea89e388
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -19,8 +19,8 @@ tools:
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 8dc7512c9dc9
   - 1dd7adc21b6d
+  - 8dc7512c9dc9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
@@ -33,23 +33,23 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - 1b52f0c8ad7f
   - d6c074a93c51
+  - 1b52f0c8ad7f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - a79ee60b6926
-  - b5d8e5475247
-  - fe3ca740a485
-  - 4f2967b27e67
-  - 1aae04680c4b
-  - 133f36c29579
   - 3e1f6f6d557e
   - 44018dd6b447
+  - 4f2967b27e67
   - cd2480f35935
+  - b5d8e5475247
+  - 133f36c29579
+  - fe3ca740a485
   - f29602ae449e
+  - a79ee60b6926
+  - 1aae04680c4b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,36 +62,36 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - f1e653756174
   - 6519ebe25019
-  - 7be22100e5e1
   - dc027fa56d55
+  - 7be22100e5e1
+  - f1e653756174
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - 28433faa6e42
-  - ca6d970d931c
   - bd0e53f3a891
+  - ca6d970d931c
   - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - 92eee5f31117
-  - 728dacaf08a9
   - d77802fe76f7
+  - 728dacaf08a9
   - da5f1924bb2e
+  - 92eee5f31117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
+  - 7355bbf5e05f
   - fe48aa4ccd5e
   - 8fd427007e93
-  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -124,9 +124,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
+  - d9c3016f7283
   - 9d1fbff733cf
   - 63662ae295d6
-  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -156,60 +156,60 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
   - b6b5cd37f2a2
-  - 14f588312c56
   - 756376aeb1ae
-  - 9f2455341fac
+  - 3bbe70fef6df
   - 9c15ca7e764e
+  - 9f2455341fac
+  - 14f588312c56
   - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - a230ea445788
   - 8e1ace8f77c6
-  - 989f7c061f35
-  - 73428a792541
-  - 1691af4a0d17
   - 30fb23d4c31c
+  - 989f7c061f35
   - 0ffe5be70caf
+  - a230ea445788
+  - 1691af4a0d17
+  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 5a5ae61da69c
-  - e94187d661df
   - 494f0bb4a993
+  - 5a5ae61da69c
+  - 30f08d74024f
+  - 563a19373357
   - 0418d28136de
+  - e94187d661df
   - 57c6718cbfcc
-  - 563a19373357
-  - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f77d7b685bb3
+  - f31125bb85ea
   - 1bc5a03faf2e
+  - f77d7b685bb3
   - d6c7106b7b2e
-  - f31125bb85ea
   - 2bba2ff070d9
-  - 4b96ced19f75
   - 7abc5f6dd595
+  - 4b96ced19f75
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - b3cf4684e9c7
   - 520e30695ec3
-  - d3af38b9c7e1
+  - fed64e676186
   - 54961e026fe4
+  - b3cf4684e9c7
+  - d3af38b9c7e1
   - d77fdcca400e
-  - fed64e676186
   - 52af33194019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -222,9 +222,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 79261884facd
-  - 2aea122fbd25
   - 07d7991bf205
+  - 2aea122fbd25
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -237,9 +237,9 @@ tools:
   owner: iuc
   revisions:
   - ef2ad746b589
-  - 602de62d995b
   - 8b3e3657034e
   - 43798b4caee0
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -263,8 +263,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -297,19 +297,19 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
-  - 3c1a01127868
   - 370c210d9541
+  - 3c1a01127868
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - b815ec682418
-  - e95d52d295d7
+  - 033755194fe9
   - c8ac28e8ac44
+  - e95d52d295d7
   - 624606f7c996
-  - 033755194fe9
+  - b815ec682418
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -351,11 +351,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - 8a22554cdde2
   - a17498c603ec
-  - d643e3b03500
-  - bf68eb663bc3
   - eaee459f3d69
+  - 8a22554cdde2
+  - bf68eb663bc3
+  - d643e3b03500
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -367,15 +367,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 41bfbaf3c959
   - 8661b2607b7e
+  - 41bfbaf3c959
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -400,14 +400,14 @@ tools:
   owner: iuc
   revisions:
   - cfcf33df7fc0
+  - 68693743661e
+  - c7275bd8b4d6
+  - 5c7b70713fb5
   - 268d162b9c49
   - 5b80f544c67f
+  - 5a29ab10dba6
   - 6322be79bd8e
   - 8f92c2b26e6d
-  - 5a29ab10dba6
-  - 68693743661e
-  - c7275bd8b4d6
-  - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
@@ -440,18 +440,18 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
+  - 809dfc93d593
   - 45083d070fb8
   - 8cb134b8c1a5
+  - 37213cf56392
+  - d03af1c7002c
+  - ba6f87115e13
+  - 200c378d85f3
+  - 037a11682176
   - 4839e590cb26
-  - ac8250086ac3
-  - 809dfc93d593
   - 51dd22484644
-  - 037a11682176
-  - 200c378d85f3
-  - d03af1c7002c
   - e1a9d6fd258d
-  - ba6f87115e13
-  - 37213cf56392
+  - ac8250086ac3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel