chore: initializing repository

.editorconfig

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+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.{json, yaml,yml}]
+indent_size = 2
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+[LICENSE]
+insert_final_newline = false
+
+[Makefile]
+indent_style = tab

.github/ISSUE_TEMPLATE/bug_report.md

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+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: bug
+assignees: ''
+
+---
+
+<!--
+For general questions please use the Discussions section of the project:
+
+https://github.com/bihealth/reev/discussions
+
+For bug reports and feature requests please open a ticket using the templates!
+-->
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Smartphone (please complete the following information):**
+ - Device: [e.g. iPhone6]
+ - OS: [e.g. iOS8.1]
+ - Browser [e.g. stock browser, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: enhancement
+assignees: ''
+
+---
+
+<!--
+For general questions please use the Discussions section of the project:
+
+https://github.com/bihealth/reev/discussions
+
+For bug reports and feature requests please open a ticket using the templates!
+-->
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/dependabot.yml

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+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+ - package-ecosystem: "pip"
+ directory: "/"
+ schedule:
+ interval: "weekly"

.github/workflows/automerge.yml

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+name: Dependabot auto-merge
+
+on: pull_request
+
+permissions:
+ contents: write
+
+jobs:
+ dependabot:
+ runs-on: ubuntu-latest
+ if: ${{ github.actor == 'dependabot[bot]' }}
+ steps:
+ - name: Enable auto-merge for Dependabot PRs
+ run: gh pr merge --auto --squash "$PR_URL"
+ env:
+ PR_URL: ${{github.event.pull_request.html_url}}
+ # GitHub provides this variable in the CI env. You don't
+ # need to add anything to the secrets vault.
+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/conventional-prs.yml

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+name: PR
+on:
+ pull_request_target:
+ types:
+ - opened
+ - reopened
+ - edited
+ - synchronize
+
+jobs:
+ title-format:
+ runs-on: ubuntu-latest
+ steps:
+ - uses: amannn/action-semantic-pull-request@v3.4.0
+ env:
+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+ with:
+ validateSingleCommit: true

.github/workflows/docker-build.yml

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+on:
+ push:
+ branches:
+ - main
+ pull_request:
+ branches:
+ - main
+
+# This workflow is run as part of CI to test that they run through.
+#
+# The images are pushed to `ghcr.io` for each PR and branch. The ones for
+# the releases are pushed in `release-please.yml`.
+name: Docker Build
+
+env:
+ REGISTRY: ghcr.io
+ IMAGE_NAME: ${{ github.repository }}
+
+jobs:
+ Image-Build-Push:
+ runs-on: ubuntu-latest
+ permissions:
+ contents: read
+ packages: write
+
+ steps:
+ - name: Checkout repository
+ uses: actions/checkout@v3
+ with:
+ fetch-depth: "0"
+
+ - name: Log in to the Container registry
+ uses: docker/login-action@v2
+ with:
+ registry: ${{ env.REGISTRY }}
+ username: ${{ github.actor }}
+ password: ${{ secrets.GITHUB_TOKEN }}
+
+ - name: Extract metadata (tags, labels) for Docker
+ id: meta
+ uses: docker/metadata-action@v4
+ with:
+ images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+ tags: |
+ type=ref,event=branch
+ type=ref,event=pr
+
+ - name: Write "git describe --tags --dirty" to VERSION
+ run: |
+ git describe --tags --dirty | tee VERSION
+
+ - name: Build and push Docker image
+ uses: docker/build-push-action@v4
+ with:
+ context: .
+ file: utils/docker/Dockerfile
+ tags: ${{ steps.meta.outputs.tags }}
+ labels: ${{ steps.meta.outputs.labels }}
+ push: true
+ build-args:
+ version_file=VERSION

.github/workflows/main.yml

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+name: CI
+
+on:
+ push:
+ branches:
+ - main
+ pull_request:
+ branches_ignore: []
+
+jobs:
+ cancel-previous:
+ runs-on: ubuntu-latest
+ if: github.ref != 'refs/heads/main'
+ steps:
+ - uses: khan/pull-request-workflow-cancel@1.0.0
+ with:
+ workflows: "main.yml"
+ env:
+ GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+
+ linting:
+ runs-on: ubuntu-latest
+ steps:
+ - uses: actions/checkout@v1
+
+ - name: Install Python
+ uses: actions/setup-python@v2
+ with:
+ python-version: "3.8"
+
+ - name: Install dependencies
+ run: |
+ pip install -r requirements/test.txt
+ pip freeze
+
+ - name: Run linting tools
+ run: |
+ make lint
+
+ - name: Comment PR
+ if: github.event_name == 'pull_request' && failure()
+ uses: marocchino/sticky-pull-request-comment@v1.1.0
+ with:
+ message: 'Please format your code with [black](https://black.readthedocs.io): `make black`.'
+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+ sphinx-docs:
+ runs-on: ubuntu-latest
+ steps:
+ - uses: actions/checkout@v1
+
+ - name: Install Python
+ uses: actions/setup-python@v2
+ with:
+ python-version: "3.8"
+
+ - name: Install dependencies
+ run: |
+ pip install -r requirements/test.txt
+ pip freeze
+
+ - name: Build documentation
+ run: |
+ cd docs
+ make html
+
+
+ testing:
+ runs-on: ubuntu-latest
+ strategy:
+ matrix:
+ python-version:
+ - '3.8'
+ - '3.9'
+ - '3.10'
+ - '3.11'
+ needs: linting
+ steps:
+ - uses: actions/checkout@v2
+ with:
+ fetch-depth: 0 # we need tags for versioneer to work
+
+ - name: Install Python
+ uses: actions/setup-python@v2
+ with:
+ python-version: ${{ matrix.python-version }}
+
+ - name: Install dependencies
+ run: |
+ pip install -r requirements/test.txt
+ pip freeze
+
+ - name: Run tests
+ run: pytest
+
+ - uses: codecov/codecov-action@v3

.github/workflows/release-please.yml

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+on:
+ push:
+ branches:
+ - main
+
+name: release-please
+
+jobs:
+ release-please:
+ runs-on: ubuntu-latest
+ steps:
+
+ - uses: GoogleCloudPlatform/release-please-action@v2
+ id: release
+ with:
+ release-type: python
+ package-name: cada-prio
+ token: ${{ secrets.BOT_TOKEN }}
+
+ - uses: actions/checkout@v2
+ if: ${{ steps.release.outputs.release_created }}
+ with:
+ fetch-depth: 0
+
+ - name: Set up Python
+ if: ${{ steps.release.outputs.release_created }}
+ uses: actions/setup-python@v2
+ with:
+ python-version: '3.x'
+
+ - name: Build package
+ if: ${{ steps.release.outputs.release_created }}
+ run: |
+ python -m pip install --upgrade pip
+ python setup.py sdist
+
+ - name: Publish to PyPI
+ if: ${{ steps.release.outputs.release_created }}
+ uses: pypa/gh-action-pypi-publish@release/v1
+ with:
+ user: __token__
+ password: ${{ secrets.PYPI_TOKEN }}