fix: allow "OMIM:" and "MIM:" prefixes in omim_id param (#178) (#179)

src/server/run/hpo_omims.rs

@@ -52,6 +52,25 @@ pub struct Query {
  pub hpo_terms: bool,
 }
 
+impl Query {
+ /// Strip "OMIM:" prefix from `omim_id`, if any.
+ fn with_stripped_prefix(self) -> Self {
+ Self {
+ omim_id: self.omim_id.map(|omim_id| {
+ let lower_omim_id = omim_id.to_lowercase();
+ if lower_omim_id.starts_with("omim:") {
+ omim_id[5..].to_string()
+ } else if lower_omim_id.starts_with("mim:") {
+ omim_id[4..].to_string()
+ } else {
+ omim_id
+ }
+ }),
+ ..self
+ }
+ }
+}
+
 /// Return default of `Request::max_results`.
 fn _default_max_results() -> usize {
  100
@@ -164,6 +183,9 @@ async fn handle(
  let match_ = query.match_.unwrap_or_default();
  let mut result: Vec<ResultEntry> = Vec::new();
 
+ // Strip "OMIM:" and "MIM:" prefix from `query.omim_id` if given.
+ let query = query.into_inner().with_stripped_prefix();
+
  if match_ == Match::Exact {
  let omim_disease = if let Some(omim_id) = &query.omim_id {
  let omim_id = OmimDiseaseId::try_from(omim_id.as_ref())
@@ -238,7 +260,7 @@ async fn handle(
 
  let result = Result {
  version: Version::new(&data.ontology.hpo_version()),
- query: query.into_inner(),
+ query,
  result,
  };