feat: remove Phenix-like P-value precomputation (#148)

.vscode/launch.json

@@ -0,0 +1,57 @@
+{
+ // Use IntelliSense to learn about possible attributes.
+ // Hover to view descriptions of existing attributes.
+ // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+ "version": "0.2.0",
+ "configurations": [
+ {
+ "type": "lldb",
+ "request": "launch",
+ "name": "Debug executable 'viguno'",
+ "cargo": {
+ "args": [
+ "build",
+ "--bin=viguno",
+ "--package=viguno"
+ ],
+ "filter": {
+ "name": "viguno",
+ "kind": "bin"
+ }
+ },
+ "args": [
+ "simulate",
+ "--ic-base", "gene",
+ "--similarity", "resnik",
+ "--combiner", "fun-sim-avg",
+ "--path-hpo-dir", "/home/holtgrem_c/Development/varfish-db-downloader/work/download/hpo/20240111",
+ "--path-out-rocksdb", "/tmp/viguno-rocksdb",
+ "--min-terms", "1",
+ "--max-terms", "1",
+ "--num-simulations", "10",
+ "--only-gene", "ARID1B",
+ "--seed", "42"
+ ],
+ "cwd": "${workspaceFolder}"
+ },
+ {
+ "type": "lldb",
+ "request": "launch",
+ "name": "Debug unit tests in executable 'viguno'",
+ "cargo": {
+ "args": [
+ "test",
+ "--no-run",
+ "--bin=viguno",
+ "--package=viguno"
+ ],
+ "filter": {
+ "name": "viguno",
+ "kind": "bin"
+ }
+ },
+ "args": [],
+ "cwd": "${workspaceFolder}"
+ }
+ ]
+}