2018-01-08

New updated settings for TIDDIT. The final VCF contain about 2000 - 3000 SV calls. All output files from the variant callers used can be found in a sample specific folder.

SVenX - Structural variant callers from 10x genomics fastq-files

SVenX v0.0.0

Function

SVenX v0.0.0 takes 10x genomics fastq-files as input and runs user selected programs such as Longranger WGS, VEP, TIDDIT, CNVnator, SVDB and filtering steps. SVenX v0.0.0 can take one sample as input or a folder of several samples. The samples will also be checked if they contain all required files (three fastq-files, I1, R1 and R2) before running annotations and loooking for structural variants.