testing badges v2 #15

	name: Python Package using Conda

	on: [push]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.10
	uses: actions/setup-python@v3
	with:
	python-version: '3.10'
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Install dependencies
	run: \|
	conda env update --file environment.yml --name base
	- name: Lint with flake8
	run: \|
	conda install flake8
	pip install flake8-html
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --format=html --htmldir ./reports/flake8 --statistics --tee --output-file flake8stats.txt
	- name: Install HyVR-fork
	run: \|
	pip install .
	- name: Install genbadge
	run: \|
	pip install genbadge[all]
	- name: Test with pytest
	run: \|
	conda install pytest
	pytest --junitxml=reports/junit/junit.xml --html=reports/junit/report.html
	- name: Coverage tests
	run: \|
	pip install coverage
	NUMBA_DISABLE_JIT=1 coverage run -m pytest
	coverage report -m
	coverage xml -d reports/coverage
	coverage html -d reports/coverage
	- name: Generate badges
	run: \|
	genbadge coverage
	genbadge flake8
	genbadge pytest

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