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Explore the impact of total read count normalization on spatial transcriptomics data

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Code and data to generate results of paper 'Transcriptional output, cell types densities and normalization in spatial transcriptomics'

To run the code in a *NIX environment:

1- If necessary install R 3.4.4 or above.

2- cd to the directory where this package is installed.

3- R CMD BATCH R/st-normalization.R

Code takes a few minutes to execute.

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Explore the impact of total read count normalization on spatial transcriptomics data

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