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recycle rep to pass data.table 1.12.2 #2

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Feb 13, 2019
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recycle rep to pass data.table 1.12.2 #2

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50 changes: 38 additions & 12 deletions R/summaryPOUMM.R
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Original file line number Diff line number Diff line change
Expand Up @@ -102,8 +102,8 @@ summary.POUMM <- function(object, ...,
}

an.MCMC <- rbindlist(anlist)
an.MCMC[, samplePriorMCMC:=c(object$spec$samplePriorMCMC,
rep(FALSE, object$spec$nChainsMCMC - 1))]
an.MCMC[, samplePriorMCMC:=rep( c(object$spec$samplePriorMCMC,
rep(FALSE, object$spec$nChainsMCMC - 1)), length.out=.N) ]

if(mode[1] != 'expert') {
an.MCMC <- an.MCMC[,
Expand Down Expand Up @@ -286,16 +286,42 @@ plot.summary.POUMM <- function(
if(!is.null(.stat)) {stat %in% .stat} else TRUE
} & {
if(!is.null(.chain)) {chain %in% .chain} else TRUE
}, list(
N, MLE,
samplePriorMCMC,
HPDLower = sapply(HPD, function(.) .[1]),
HPDUpper = sapply(HPD, function(.) .[2]),
HPD50Lower = sapply(HPD50, function(.) .[1]),
HPD50Upper = sapply(HPD50, function(.) .[2]),
ESS,
value = unlist(mcmc),
it = seq(x$startMCMC, by = x$thinMCMC, along.with = mcmc[[1]])),
}, { MAX = length(unlist(mcmc)) # 'value=' below is longest item
ans <- list(
rep(N, length=MAX),
rep(MLE, length=MAX),
rep(samplePriorMCMC,length=MAX),
HPDLower = rep(sapply(HPD, function(.) .[1]), length=MAX),
HPDUpper = rep(sapply(HPD, function(.) .[2]), length=MAX),
HPD50Lower = rep(sapply(HPD50, function(.) .[1]), length=MAX),
HPD50Upper = rep(sapply(HPD50, function(.) .[2]), length=MAX),
rep(ESS, length=MAX),
value = unlist(mcmc), # this is the longest (MAX)
it = rep(seq(x$startMCMC, by = x$thinMCMC, along.with = mcmc[[1]]), length=MAX))
# if (.GRP==13) print(ans)
# it's group 13 that has 2 rows :
# data[,.N, list(stat = factor(stat), chain = factor(chain))]
# stat chain N
# <fctr> <fctr> <int>
# 1: alpha 1 1
# 2: alpha 2 1
# 3: alpha 3 1
# 4: theta 1 1
# 5: theta 2 1
# 6: theta 3 1
# 7: sigma 1 1
# 8: sigma 2 1
# 9: sigma 3 1
# 10: sigmae 1 1
# 11: sigmae 2 1
# 12: sigmae 3 1
# 13: g0 1 2 # .N==2 for the first time but 'value' is length 18
# 14: g0 2 2
# 15: g0 3 2
# 16: H2tMean 1 1
# 17: H2tMean 2 1
# 18: H2tMean 3 1
ans },
by = list(stat = factor(stat), chain = factor(chain))]

if(doZoomIn) {
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