Release candidate

Development/Create_the_MarkdownReports_Package.R

@@ -41,7 +41,7 @@ DESCRIPTION <- list("Title" = "Generate Scientific Figures and Reports Easily",
     3. Link & display your figures automatically inside your report, right there where they are needed.
     4. Version your findings, annotating which parameters were used to reach certain results.
     5. Share your report with others via email, Github or a personal website.", "License" = "GNU GPL 3",
-		"Version"= "2.9.4.5", "Imports" = "vioplot, gplots, VennDiagram"
+		"Version"= "2.9.4.6", "Imports" = "vioplot, gplots, VennDiagram"
 )
 
 setwd(RepositoryDir)

MarkdownReports/R/MarkdownReports.R.bac

@@ -83,7 +83,8 @@ setup_MarkdownReports <- function (OutDir = getwd(), scriptname = basename(OutDi
 
 create_set_SubDir <- function (..., makeOutDirOrig=T, setDir=T) {
   if ( ! substrRight(OutDir, 1) == "/" )  OutDir = paste0(OutDir, "/") # add '/' if necessary
-  NewOutDir = kollapse(OutDir,  ..., "/", print = F)
+  NewOutDir = kollapse(OutDir,  ..., print = F)
+  if ( ! substrRight(NewOutDir, 1) == "/" )  NewOutDir = paste0(NewOutDir, "/") # add '/' if necessary
   NewOutDir = gsub(x=NewOutDir, pattern = '//', replacement = '/') # replace //
   iprint("All files will be saved under 'NewOutDir': ", NewOutDir)
   if (!exists(NewOutDir)) {	dir.create(NewOutDir)	}
@@ -152,7 +153,6 @@ wplot_save_this <- function (plotname = ww.autoPlotName(), ..., w = UnlessSpec("
   if (mdlink) { ww.MarkDown_Img_Logger_PDF_and_PNG(fname_wo_ext = plotname) }
 }
 
-
 #' wplot
 #'
 #' Create and save scatter plots as .pdf, in "OutDir". If mdlink =T, it inserts a .pdf and a .png link in the markdown report, set by "path_of_report". The .png version is not created, only the link is put in place, not to overwrite previous versions. The .png version is not created, only the link is put in place. You can add 2D error bars around the dots, or add lines (ablines) to your plot, by setting "abline" argument to = F (no line, default), "h" (horizontal, further specified by a = y-offset), "v" (vertical, further specified by a = x-offset), "ab" (line with an angle, further specified by a = offset, b = slope).