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Welcome to the vg_wdl wiki!

This repository provides tools written in the Workflow Description Language (WDL) developed by the Broad Institute to more easily run pipelines that use the Variation Graph (VG) toolkit.

For more information about WDL and Cromwell and how to use them together please see the official documentation:

• VG main github page
• WDL user documentation
• Cromwell user documentation

Usage guides

NIH Biowulf Cluster Usage

• Running a Tiny HG002 Example
• Running a Whole Genome Pedigree Dataset