Code

Add agat convert genscan2gff#100

Code

Merged

rcannood merged 25 commits intomainviash-hub/biobox:mainfrom add-agat_convert_genscan2gffviash-hub/biobox:add-agat_convert_genscan2gffCopy head branch name to clipboardSep 16, 2024

+413

Commits

Commits on Jul 30, 2024

• add config

  Leila011

  committed
  2d2bdff

  Copy full SHA for 2d2bdff

• add help

  Leila011

  committed
  25ad1b0

  Copy full SHA for 25ad1b0

• add test data and expected output adn the script to obtain them

  Leila011

  committed
  00e8fbc

  Copy full SHA for 00e8fbc

• add running script

  Leila011

  committed
  918a17d

  Copy full SHA for 918a17d

• add test script

  Leila011

  committed
  ea05f34

  Copy full SHA for ea05f34

• update changelog

  Leila011

  committed
  488bbd3

  Copy full SHA for 488bbd3

• cleanup

  Leila011

  committed
  18ef152

  Copy full SHA for 18ef152

Commits on Jul 31, 2024

• fix tests

  Leila011

  committed
  0daefb5

  Copy full SHA for 0daefb5

Commits on Aug 13, 2024

• Merge main into add-agat_convert_genscan2gff

  rcannood

  committed
  d9d68bb

  Copy full SHA for d9d68bb

Commits on Aug 19, 2024

• format description

  Leila011

  committed
  98cb706

  Copy full SHA for 98cb706

• remove unused argument --inflate-off

  Leila011

  committed
  c21ae86

  Copy full SHA for c21ae86

• update --config description

  Leila011

  committed
  4e3a98c

  Copy full SHA for 4e3a98c

• add requirements

  Leila011

  committed
  3612a65

  Copy full SHA for 3612a65

• create temporary directory and clean up on exit

  Leila011

  committed
  d63e267

  Copy full SHA for d63e267

• add GENSCAN in keywords

  Leila011

  committed
  6588457

  Copy full SHA for 6588457

• add set -e to test

  Leila011

  committed
  11ce152

  Copy full SHA for 11ce152

• fix create temporary directory

  Leila011

  committed
  3f646ba

  Copy full SHA for 3f646ba

• add set -eo pipefail to test

  Leila011

  committed
  c471b25

  Copy full SHA for c471b25

• add set -eo pipefail to script

  Leila011

  committed
  e4a814f

  Copy full SHA for e4a814f

• fix create temporary directory

  Leila011

  committed
  30fd75e

  Copy full SHA for 30fd75e

• update --config description

  Leila011

  committed
  22a98f0

  Copy full SHA for 22a98f0

• cleanup changelog

  Leila011

  committed
  1a1b750

  Copy full SHA for 1a1b750

• cleanup changelog

  Leila011

  committed
  8895d08

  Copy full SHA for 8895d08

Commits on Sep 16, 2024

• Update deprecated variable

  rcannood

  authored
  1814c3e

  Copy full SHA for 1814c3e

• Merge branch 'main' into add-agat_convert_genscan2gff

  rcannood

  authored
  ae3d74b

  Copy full SHA for ae3d74b