Fix nextflow issues

[rcannood]

Describe your changes

Related issue(s)

Closes #xxxx

Type of Change

• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• New functionality (non-breaking change which adds functionality)
• Major change (non-breaking change which modifies existing functionality)
• Minor change (non-breaking change which does not modify existing functionality)
• Bug fix (non-breaking change which fixes an issue)
• This change requires a documentation update

Checklist

Requirements:

• I have read the CONTRIBUTING doc.
• I have performed a self-review of my code by checking the "Changed Files" tab.
• My code follows the code style of this project.

Tests:

• I have added tests that prove my fix is effective or that my feature works.
• New and existing unit tests pass locally with my changes.

Documentation:

• Proposed changes are described in the CHANGELOG.md.
• I have updated the documentation accordingly.

Test Environment

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 88.76%. Comparing base (32468ad) to head (f0ede1a).

Additional details and impacted files

@@             Coverage Diff              @@
##           develop_0_8     #663   +/-   ##
============================================
  Coverage        88.76%   88.76%           
============================================
  Files              120      120           
  Lines             3630     3630           
  Branches           526      526           
============================================
  Hits              3222     3222           
  Misses             408      408           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.