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Bump viash-io/viash-actions from 5 to 6 #573

Bump viash-io/viash-actions from 5 to 6

Bump viash-io/viash-actions from 5 to 6 #573

Workflow file for this run

on:
push:
branches: [ main ]
pull_request:
types:
- opened
- reopened
- synchronize
- closed
# to be able to trigger a manual build
workflow_dispatch:
name: Render project
jobs:
build-deploy:
runs-on: ubuntu-latest
env:
RENV_PATHS_ROOT: ~/.local/share/renv
steps:
# need to get more space for docker images
- uses: data-intuitive/reclaim-the-bytes@v2
- uses: actions/checkout@v4
- name: Replace Docker with podman
run: |
echo 'shopt -s expand_aliases' >> ~/.bash_profile
echo 'alias docker=podman' >> ~/.bash_profile
- name: Check podman
shell: bash -l {0}
run: |
docker -v
- uses: r-lib/actions/setup-r@v2
with:
r-version: "4.4"
use-public-rspm: true
# - uses: actions/setup-python@v4
# with:
# python-version: "3.10"
- uses: nf-core/setup-nextflow@v1
- uses: viash-io/viash-actions/setup@v6
- name: Install dependencies via renv restore
run: |
Rscript -e 'renv::restore()'
- name: Install Quarto
uses: quarto-dev/quarto-actions/setup@v2
with:
tinytex: true
- name: Render with Quarto
shell: bash -l {0}
run: |
# source renv/python/virtualenvs/renv-python-3.10/bin/activate
# environment variable that enables docker image pruning
# between different pages to save on disk space
export PRUNE_IMAGES=true
quarto render
- name: Add previous versions of the website to the rendered pages
run: |
mkdir -p ./_site/versioned
find ./_versioned -name '*.tar.xz' -exec tar -Jxf {} -C ./_site/versioned/ \;
- name: Deploy 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4
with:
folder: _site
branch: gh-pages
force: false
clean-exclude: pr-preview/
- name: Deploy preview
if: github.event_name == 'pull_request'
uses: rossjrw/pr-preview-action@v1
with:
source-dir: _site
preview-branch: gh-pages
umbrella-dir: pr-preview
action: auto