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Add strategy filter based on adaptive thresholds (e.g.: MAD) #47

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dweemx opened this issue Oct 28, 2020 · 0 comments · Fixed by vib-singlecell-nf/vsn-pipelines#262 or #49
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Add strategy filter based on adaptive thresholds (e.g.: MAD) #47

dweemx opened this issue Oct 28, 2020 · 0 comments · Fixed by vib-singlecell-nf/vsn-pipelines#262 or #49
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dweemx commented Oct 28, 2020

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@dweemx dweemx added the enhancement New feature or request label Oct 28, 2020
@dweemx dweemx self-assigned this Oct 28, 2020
dweemx added a commit that referenced this issue Oct 30, 2020
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Add new cell filter strategy 'adaptivethresholds' based on the MAD of…
19ced87 
… the QC metrics distributions (in log space) Closes #47

Plus use safe navigation operator
dweemx added a commit to vib-singlecell-nf/vsn-pipelines that referenced this issue Oct 30, 2020
@dweemx
[scanpy] Update scanpy tool
b1923bb 
- Add plots for the n_counts filter in filter QC report python notebook
- Closes vib-singlecell-nf/scanpy#47
@cflerin cflerin mentioned this issue Dec 1, 2020
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@dweemx dweemx mentioned this issue Dec 3, 2020
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@cflerin cflerin mentioned this issue Dec 3, 2020
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KrisDavie pushed a commit to vib-singlecell-nf/vsn-pipelines that referenced this issue Dec 8, 2020
@dweemx
[scanpy] Update scanpy tool
016c259 
- Add plots for the n_counts filter in filter QC report python notebook
- Closes vib-singlecell-nf/scanpy#47


Former-commit-id: b1923bb
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Develop for v0.22.0 vib-singlecell-nf/vsn-pipelines
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